Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003000A_C01 KCC003000A_c01
(512 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42213.1| unknown protein [Arabidopsis thaliana] 50 2e-05
ref|NP_173559.1| expressed protein [Arabidopsis thaliana] 50 2e-05
emb|CAE02752.1| OSJNBa0006B20.22 [Oryza sativa (japonica cultiva... 40 0.017
sp|P13615|RRPL_VSVJH RNA polymerase beta subunit (Large structur... 35 0.56
ref|ZP_00023358.1| hypothetical protein [Ralstonia metallidurans] 33 2.1
>gb|AAO42213.1| unknown protein [Arabidopsis thaliana]
Length = 342
Score = 49.7 bits (117), Expect = 2e-05
Identities = 31/77 (40%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
Frame = +3
Query: 285 VRISLLALVLLPALYYLSGRGNSENSALQRNRKL-LESEAKSLIPAASLKNLVLVAGHAV 461
V + L+L+ ++Y GN S + +K L+S+ P A+LKNLV+VAGH+V
Sbjct: 66 VSFGITVLILVSSIY-----GNRLGSTVSYYKKNDLDSDG---YPFANLKNLVMVAGHSV 117
Query: 462 YTGVDYSEANKEASWFL 512
YT D + KE SWFL
Sbjct: 118 YTSSDCGKVEKEDSWFL 134
>ref|NP_173559.1| expressed protein [Arabidopsis thaliana]
Length = 342
Score = 49.7 bits (117), Expect = 2e-05
Identities = 31/77 (40%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
Frame = +3
Query: 285 VRISLLALVLLPALYYLSGRGNSENSALQRNRKL-LESEAKSLIPAASLKNLVLVAGHAV 461
V + L+L+ ++Y GN S + +K L+S+ P A+LKNLV+VAGH+V
Sbjct: 66 VSFGITVLILVSSIY-----GNRLGSTVSYYKKNDLDSDG---YPFANLKNLVMVAGHSV 117
Query: 462 YTGVDYSEANKEASWFL 512
YT D + KE SWFL
Sbjct: 118 YTSSDCGKVEKEDSWFL 134
>emb|CAE02752.1| OSJNBa0006B20.22 [Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 40.0 bits (92), Expect = 0.017
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 414 PAASLKNLVLVAGHAVYTGVDYSEANKEASWFL 512
P L+NLV+VAGH++YT + ++E SWFL
Sbjct: 99 PLPELRNLVMVAGHSIYTSESCGKIDREDSWFL 131
>sp|P13615|RRPL_VSVJH RNA polymerase beta subunit (Large structural protein) (L protein)
gi|75271|pir||ZLVNNJ genome polyprotein - vesicular
stomatitis New Jersey virus (strain Hazelhurst)
gi|336026|gb|AAA48440.1| L protein
Length = 2109
Score = 35.0 bits (79), Expect = 0.56
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 28/118 (23%)
Frame = -2
Query: 451 PATSTRFFSDAAGMRDFASDSSSFLFRCSAEFSEFPRPLR*Y-KAGSST----------- 308
PAT TR + MRDF + + F+F+ S + + + Y GS T
Sbjct: 1244 PATLTRMIATTDTMRDFGTKNYDFMFQASLLYGQMTTSISRYGSPGSCTDHYHIRCKGCI 1303
Query: 307 --------KASNEMRTPVRIHFLCAANSFDGCGE*PYWG--------SPGNWDEVPPV 182
S E RTPV H L + G WG + GNW+ + PV
Sbjct: 1304 REIEEVELNTSLEYRTPVVYHILEKWRNNTGS-----WGHQIKQLKPAEGNWESLSPV 1356
>ref|ZP_00023358.1| hypothetical protein [Ralstonia metallidurans]
Length = 228
Score = 33.1 bits (74), Expect = 2.1
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = -3
Query: 504 TRLPCLPPNSPHPCIRRAPPRALGSSVMPQG*GTLPPTRAASYSVAARNSQSFLARSGST 325
TR+PC P +P RR PP + SS+ + +LP A+ V+ R S S A S T
Sbjct: 30 TRVPCQPLGAP----RRYPPYSFPSSLAARITLSLPRGDRATSPVSRRRSTS--ACSTPT 83
Query: 324 R---LAVAPRPATRCALLSE 274
R +A AP P T L E
Sbjct: 84 RRFVMATAPNPFTDITKLLE 103
