KCC002997A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002997A_C01 KCC002997A_c01
tgctcgtagccagcgtgtggctgtgcgcctggaacttcggagcggccatcggagcggcac
ctgtggcgctggccgtcgtaCTGCTGCTCGGCCAACGGTACTGCCGCGTGACAGTCGCGG
CGGCTATGCAAGTGCGGGCAGCGGCATGGGCTAGCCTGTCGGCGCGGTGGGCTGGTGCCG
CATCGGCTTCCTGGAGGGCGTGGCTCATGGCAGTTATCAGGGCTGTGCAGTTTGCAGTCC
GGGCATCGCTGTGGCTCTTGGTGTGGATCCCGGTATCCACCTGTACCGGCATGGTGTCAC
GGCTCGATGAGTACTGGCCGTTGTCAGTGTCCGTATGCGTCTTCGTCGTGCAGGTGTGTC
GTGCGGTCAGCGGTGGTGCGCTGCCGCCAGCAGATGTGAGCGCTAATTTGCTATGGCTAG
TGGGCGACATCAGGTCCCTAGCGGGCATTGCGCTCTTCTCCTGGAAGTCCCTGCTGGTGG
CCCAGGAGCGTGGGGCTTGGATATTGGTGAATTGGTGCAAGGAGTGGATGGGGTGCGCCA
CGGTTGTGGCGTAACTGTTGAACGTTATATGGGCACGACTTCCTGGTCTTACTTGTGACT
TGTAACACAGCTGTACAACAGAGCTGGAGTACCGAGCCCTTGCCTGGGCAGTACCAGCCA
TTACTTGTTATATGTACTTTGCTGCCGATACCGGCATACTTTGTATGATGTGTAAAGTAG
TAGATGTGGCAGCGTCCTGCTGCTGCTGGTCGAGGAATGTCTGTGGCAATTCTTCCCCGC
CGTTAGAGTCGCTGCACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002997A_C01 KCC002997A_c01
         (798 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF68048.1|AF252666_1 eyelid [Drosophila simulans]                  49  7e-05
ref|NP_346206.1| cell wall surface anchor family protein [Strept...    48  2e-04
emb|CAD27464.1| SPAPB15E9.01c [Schizosaccharomyces pombe]              48  2e-04
sp|Q9N6K2|OSA_DROSI Trithorax group protein OSA (Eyelid protein)...    47  3e-04
gb|AAF68051.1|AF252669_1 eyelid [Drosophila simulans] gi|7715475...    47  3e-04

>gb|AAF68048.1|AF252666_1 eyelid [Drosophila simulans]
          Length = 324

 Score = 49.3 bits (116), Expect = 7e-05
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 5/250 (2%)
 Frame = -3

Query: 748 QQQQDAATSTTLHII-QSMPVSAAKYI*QVMAGTAQARARYSSSVVQLCYKSQVRPGSRA 572
           QQ+Q        HI+ Q + +  ++ + QV  GT    +     ++Q   + Q+RPG+  
Sbjct: 82  QQEQRLLGLVMSHILDQQVALIISRVLYQVSRGTGPIHS-VEFRLLQQRQQQQLRPGTAE 140

Query: 571 HITFNSYAT-TVAHPIHSLHQFTNIQAPRSWATSRDFQEKSAMPARDLMSPTSHSKLALT 395
               ++  + TV     S    +    P   AT+    ++++  ++ L    + + ++ +
Sbjct: 141 KQAASAGGSATVKAETASTETSSTEAKPAPAATTAVVNDENSNSSQQLPPAATFNDVSNS 200

Query: 394 SAGGSAPPLTARHTCTTKTHTDTDNGQYSSSRDTMPVQVDTGIHTKSHSDARTANCTALI 215
           S        T  ++C T +   T+N   +SS  +  +   + I   + S A T   +A  
Sbjct: 201 S--------TNSNSCGTASSNQTNNSTTNSSHSSSAISSQSAITVAAPSAAATGAPSATA 252

Query: 214 TAMSHALQEAD--AAPAHRADRLAHAAARTCIAAATVTRQYRWP-SSSTTASATGAAPMA 44
            A++   Q+    AA A  A  L++A+A    AAA        P SSS +A AT A P A
Sbjct: 253 AAIASDQQQVSKAAAAAAAAAALSNASAAAAAAAAAAAASVGPPTSSSVSAGATVAQPAA 312

Query: 43  APKFQAHSHT 14
            P   A + T
Sbjct: 313 PPPTNAGTTT 322

>ref|NP_346206.1| cell wall surface anchor family protein [Streptococcus pneumoniae
            TIGR4] gi|25389341|pir||E95206 cell wall surface anchor
            family protein [imported] - Streptococcus pneumoniae
            (strain TIGR4) gi|14973269|gb|AAK75846.1| cell wall
            surface anchor family protein [Streptococcus pneumoniae
            TIGR4]
          Length = 4776

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 60/244 (24%), Positives = 105/244 (42%)
 Frame = -3

Query: 733  AATSTTLHIIQSMPVSAAKYI*QVMAGTAQARARYSSSVVQLCYKSQVRPGSRAHITFNS 554
            A+TS +     S  VSA+       + +A A A  S+S       +     + A  + ++
Sbjct: 417  ASTSASASASTSASVSASTSASASASTSASASASTSASE-----SASTSASASASTSASA 471

Query: 553  YATTVAHPIHSLHQFTNIQAPRSWATSRDFQEKSAMPARDLMSPTSHSKLALTSAGGSAP 374
             A+T A    S     +     S + S    E SA  +    + TS S  A TSA GSA 
Sbjct: 472  SASTSASASASTSASESASTSASASASTSASE-SASTSASASASTSASASASTSASGSAS 530

Query: 373  PLTARHTCTTKTHTDTDNGQYSSSRDTMPVQVDTGIHTKSHSDARTANCTALITAMSHAL 194
              T+    T+ + + + +   S+S         +   + S S + +A+ +A  +A + A 
Sbjct: 531  TSTSASASTSASASASTSASASASISASESASTSASESASTSTSASASTSASESASTSAS 590

Query: 193  QEADAAPAHRADRLAHAAARTCIAAATVTRQYRWPSSSTTASATGAAPMAAPKFQAHSHT 14
              A  + +  A   A A+A T  +A+T   +    S+ST+ASA+ +   +A    + S +
Sbjct: 591  ASASTSASASASTSASASASTSASASTSASE----SASTSASASASTSASASASTSASAS 646

Query: 13   LATS 2
             +TS
Sbjct: 647  ASTS 650

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 3/247 (1%)
 Frame = -3

Query: 733  AATSTTLHIIQSMPVSAAKYI*QVMAGTAQARARYSSSVVQLCYKSQ---VRPGSRAHIT 563
            A+TS +     S   SA+    +  + +A A A  S+S       S+       + A  +
Sbjct: 2895 ASTSASASASTSASASASTSASESASTSASASASTSASASASTSASESASTSASASASTS 2954

Query: 562  FNSYATTVAHPIHSLHQFTNIQAPRSWATSRDFQEKSAMPARDLMSPTSHSKLALTSAGG 383
             ++ A+T A    S     +     S + S    E SA  +    + TS S  A TSA G
Sbjct: 2955 ASASASTSASASASTSASESASTSASASASTSASE-SASTSASASASTSASASASTSASG 3013

Query: 382  SAPPLTARHTCTTKTHTDTDNGQYSSSRDTMPVQVDTGIHTKSHSDARTANCTALITAMS 203
            SA   T+    T+ + + + +   S+S         +   + S S + +A+ +A  +A +
Sbjct: 3014 SASTSTSASASTSASASASTSASASASISASESASTSASESASTSTSASASTSASESAST 3073

Query: 202  HALQEADAAPAHRADRLAHAAARTCIAAATVTRQYRWPSSSTTASATGAAPMAAPKFQAH 23
             A   A  + +  A   A A+A T  +A+T   +    S+ST+ASA+ +   +A    + 
Sbjct: 3074 SASASASTSASASASTSASASASTSASASTSASE----SASTSASASASTSASASASTSA 3129

Query: 22   SHTLATS 2
            S + +TS
Sbjct: 3130 SASASTS 3136

>emb|CAD27464.1| SPAPB15E9.01c [Schizosaccharomyces pombe]
          Length = 744

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 52/233 (22%), Positives = 104/233 (44%), Gaps = 4/233 (1%)
 Frame = -3

Query: 736 DAATSTTLHIIQSMPVSAAKYI*QVMAGTAQARARYSSSVVQLCYKSQVRPGSRAHITFN 557
           ++ATS++L        ++A      ++ TA + +  SSS+      S +   + A  T +
Sbjct: 188 NSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLAS----SSLNSTTSATATSS 243

Query: 556 SYATTVAH--PIHSLHQFTNIQAPRSWATSRDFQEKSAMPARDLMSPTSHSKLALTSAGG 383
           S ++TV+   P+ S +  T   +  + ++S  +   S +P+    S    S  + T+   
Sbjct: 244 SISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSA 303

Query: 382 SAPPLTARHTCTTKTHTDTDNGQYSSSRDTMPVQVD-TGIHTKSHSDARTANCTALITAM 206
           S+ PLT+ ++ TT + + T     SS+  T       T + + + + A +A+ T L +  
Sbjct: 304 SSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVN 363

Query: 205 SHALQEADAAPAHRADRL-AHAAARTCIAAATVTRQYRWPSSSTTASATGAAP 50
           S     A + P    +   A +A+ T + +A         +S+T+ S +  AP
Sbjct: 364 STTATSASSTPLTSVNSTSATSASSTPLTSA---------NSTTSTSVSSTAP 407

 Score = 32.3 bits (72), Expect = 9.1
 Identities = 52/251 (20%), Positives = 100/251 (39%), Gaps = 8/251 (3%)
 Frame = -3

Query: 730 ATSTTLHIIQSMPVSAAKYI*QVMAGTAQARARYSSSVVQLCY-KSQVRPGSRAHITFNS 554
           A+S+T     + P S++       + +  + +  SSS+       S +   S    +  S
Sbjct: 92  ASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLAS 151

Query: 553 YATTVAHPIHSLHQFTNIQAPRSWATSRDFQEKSAMPARDLMSPTSHSKLALTSAGGSAP 374
            +TT +    S    T    P S ATS      +A  +    S  S S  + TSA  ++ 
Sbjct: 152 SSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSS 211

Query: 373 PLTARHTCTTKTHTDTDNGQYSSSRDTMPVQVDTGIHTK-------SHSDARTANCTALI 215
            L++  T  + + T +     S +  T      + I +        + S++ TA  +A  
Sbjct: 212 SLSS--TAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASA 269

Query: 214 TAMSHALQEADAAPAHRADRLAHAAARTCIAAATVTRQYRWPSSSTTASATGAAPMAAPK 35
           T+ S     +   P+        ++A +  A +  +      +S+TT SA+ + P+++  
Sbjct: 270 TSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS-STPLSS-- 326

Query: 34  FQAHSHTLATS 2
             + + T ATS
Sbjct: 327 VSSANSTTATS 337

>sp|Q9N6K2|OSA_DROSI Trithorax group protein OSA (Eyelid protein)
           gi|7715463|gb|AAF68047.1|AF252665_1 eyelid [Drosophila
           simulans] gi|7715473|gb|AAF68052.1|AF252670_1 eyelid
           [Drosophila simulans]
          Length = 324

 Score = 47.4 bits (111), Expect = 3e-04
 Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 5/250 (2%)
 Frame = -3

Query: 748 QQQQDAATSTTLHII-QSMPVSAAKYI*QVMAGTAQARARYSSSVVQLCYKSQVRPG-SR 575
           QQ+Q        HI+ Q + +  ++ + QV  GT    +     ++Q   + Q+RPG + 
Sbjct: 82  QQEQRLLGLVMSHILDQQVALIISRVLYQVSRGTGPIHS-VEFRLLQQRQQQQLRPGPAE 140

Query: 574 AHITFNSYATTVAHPIHSLHQFTNIQAPRSWATSRDFQEKSAMPARDLMSPTSHSKLALT 395
                   + TV     S    +    P   AT+    ++++  ++ L    + + ++ +
Sbjct: 141 KQAASAGGSATVKAETASTETSSTEAKPAPAATTAVVNDENSNSSQQLPPAATFNDVSNS 200

Query: 394 SAGGSAPPLTARHTCTTKTHTDTDNGQYSSSRDTMPVQVDTGIHTKSHSDARTANCTALI 215
           S        T  ++C T +   T+N   +SS  +  +   + I   + S A T   +A  
Sbjct: 201 S--------TNSNSCGTASSNQTNNSTTNSSHSSSAISSQSAITVAAPSAAATGAPSATA 252

Query: 214 TAMSHALQEAD--AAPAHRADRLAHAAARTCIAAATVTRQYRWP-SSSTTASATGAAPMA 44
            A++   Q+    AA A  A  L++A+A    AAA        P SSS +A A  A P A
Sbjct: 253 AAIASDQQQVSKAAAAAAAAAALSNASAAAAAAAAAAAASVGPPTSSSVSAGAAVAQPAA 312

Query: 43  APKFQAHSHT 14
            P   A + T
Sbjct: 313 PPPTNAGTTT 322

>gb|AAF68051.1|AF252669_1 eyelid [Drosophila simulans] gi|7715475|gb|AAF68053.1|AF252671_1
           eyelid [Drosophila simulans]
          Length = 324

 Score = 47.4 bits (111), Expect = 3e-04
 Identities = 59/250 (23%), Positives = 106/250 (41%), Gaps = 5/250 (2%)
 Frame = -3

Query: 748 QQQQDAATSTTLHII-QSMPVSAAKYI*QVMAGTAQARARYSSSVVQLCYKSQVRPGSRA 572
           QQ+Q        HI+ Q + +  ++ + QV  GT    +     ++Q   + Q+RPG+  
Sbjct: 82  QQEQRLLGLVMSHILDQQVALIISRVLYQVSRGTGPIHS-VEFRLLQQRQQQQLRPGTAE 140

Query: 571 HITFNSYAT-TVAHPIHSLHQFTNIQAPRSWATSRDFQEKSAMPARDLMSPTSHSKLALT 395
               ++  + TV     S    +    P   AT+    ++++  ++ L    + + ++ +
Sbjct: 141 KQAASAGGSATVKAETASTETSSTEAKPAPAATTAVVNDENSNSSQQLPPAATFNDVSNS 200

Query: 394 SAGGSAPPLTARHTCTTKTHTDTDNGQYSSSRDTMPVQVDTGIHTKSHSDARTANCTALI 215
           S        T  ++C T +   T+N   +SS  +  +   + I   + S A T   +A  
Sbjct: 201 S--------TNSNSCGTASSNQTNNSTTNSSHSSSAISSQSAITVAAPSAAATGAPSATA 252

Query: 214 TAMSHALQEAD--AAPAHRADRLAHAAARTCIAAATVTRQYRWP-SSSTTASATGAAPMA 44
            A++   Q+    AA A  A  L++A+A    AAA        P SSS +A A  A P A
Sbjct: 253 AAIASDQQQVSKAAAAAAAAAALSNASAAAAAAAAAAAASVGPPTSSSVSAGAAVAQPAA 312

Query: 43  APKFQAHSHT 14
            P   A + T
Sbjct: 313 PPPTNAGTTT 322



EST assemble image


clone accession position
1 LC077h09_r AV624449 1 456
2 MX044a10_r BP087813 172 517
3 MX033b08_r BP087372 295 798
4 MX056h10_r BP088306 341 700




Chlamydomonas reinhardtii
Kazusa DNA Research Institute