KCC002995A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002995A_C01 KCC002995A_c01
cggcatcccgttgcgccggtgtggtcccgtttACGTTGTAGGTGCTCTGCCGGCATAGAT
AACATAGCAGCTCAGCGACCGCAGTTCGGTTGCTGTGGGGGGCCCTCGTTCAGAATCCTT
TCGCTTTCTGGTGCTGCACGTGTCCCGCGCGATCAAAGTTCCCTCTTTCCTACGCATCAG
AATGAAATCGATAGGGAATATTGGGCTGGGCAGTGTCGCGGCCGGCCTGGCGTTATGTGC
AATCCTCGCGCCACTTGCCTCTGCCGCGGAGCTGTGCGGCCTTGAGCCCACTCCCTCGTG
CGGTGGCGATATTCGCGAGTATAGCGCAGCCATGCGCCCCTCTGACGAGGCGCTGGCGTT
CGACAACTTGCCTGGCTTTACACGCAGCGCGAGCCATTTCGACCACGCTGTGGTTAGCGT
CGAGAGCCGTGTATGGGCCGGACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002995A_C01 KCC002995A_c01
         (444 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83197.1| putative glyoxylate induced protein [Oryza sativ...    42  0.001
dbj|BAC65032.1| aminotransferase-like protein [Oryza sativa (jap...    34  0.52
ref|NP_193438.2| expressed protein [Arabidopsis thaliana] gi|264...    33  0.89
dbj|BAC31847.1| unnamed protein product [Mus musculus]                 33  1.2
ref|NP_766261.1| RIKEN cDNA 1500032A09 [Mus musculus] gi|2632685...    33  1.2

>dbj|BAC83197.1| putative glyoxylate induced protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = +2

Query: 215 VAAGLALCAILAPLASAAE-LCGLEPTPSCGG--DIRE--YSAAMRPSDEALAFDNLPGF 379
           VA+ L L ++ A      E  C  EP+ + GG   +R   Y  A  P+       +LPGF
Sbjct: 11  VASALPLASVAAGAVGVGEGFCSAEPSAASGGCSGVRPPLYWKATNPTLAPAHLQDLPGF 70

Query: 380 TRSASHFDHAVVSVESRVWA 439
           TRS    DHA+++ ES V++
Sbjct: 71  TRSVYKRDHALITPESHVFS 90

>dbj|BAC65032.1| aminotransferase-like protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 894

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 18/59 (30%), Positives = 29/59 (48%)
 Frame = -1

Query: 297 EGVGSRPHSSAAEASGARIAHNARPAATLPSPIFPIDFILMRRKEGTLIARDTCSTRKR 121
           E +G     +AAE S      +A P  TLP+P  P+ F    RK+ T + + + +T  +
Sbjct: 589 EAIGDEVDQAAAEVSDTERTPSASPRQTLPTPSAPVHF---SRKKKTAVKKKSAATTSK 644

>ref|NP_193438.2| expressed protein [Arabidopsis thaliana]
           gi|26451095|dbj|BAC42652.1| unknown protein [Arabidopsis
           thaliana]
          Length = 298

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 320 YSAAMRPSDEALAFDNLPGFTRSASHFDHAVVSVESRVWA 439
           Y  A  P+       +LPGFTRS    DHA+++ ES V++
Sbjct: 41  YWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYS 80

>dbj|BAC31847.1| unnamed protein product [Mus musculus]
          Length = 419

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
 Frame = -1

Query: 279 PHSSAAEA-SGARIAHNARPA-----ATLPSPI--FPIDFILMRRKEGTLIARDTCSTRK 124
           PH  ++ A S  R+A  A  A     + LP+P+    ++ +L+ R+    I   TCS  +
Sbjct: 314 PHVRSSRADSNERVAVIADEAYSPADSVLPTPVAEHSLELMLLSRQ----INGATCSIEE 369

Query: 123 RKDSERGPPTATELRSL 73
            K+SE   PTATE  +L
Sbjct: 370 EKESEASTPTATEAEAL 386

>ref|NP_766261.1| RIKEN cDNA 1500032A09 [Mus musculus] gi|26326853|dbj|BAC27170.1|
           unnamed protein product [Mus musculus]
          Length = 481

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
 Frame = -1

Query: 279 PHSSAAEA-SGARIAHNARPA-----ATLPSPI--FPIDFILMRRKEGTLIARDTCSTRK 124
           PH  ++ A S  R+A  A  A     + LP+P+    ++ +L+ R+    I   TCS  +
Sbjct: 314 PHVRSSRADSNERVAVIADEAYSPADSVLPTPVAEHSLELMLLSRQ----INGATCSIEE 369

Query: 123 RKDSERGPPTATELRSL 73
            K+SE   PTATE  +L
Sbjct: 370 EKESEASTPTATEAEAL 386



EST assemble image


clone accession position
1 LC075g05_r AV624298 1 444
2 MXL090b12_r BP098252 33 369




Chlamydomonas reinhardtii
Kazusa DNA Research Institute