KCC002992A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002992A_C01 KCC002992A_c01
tgcaGTAAGCTTCTTTCTTTGATAACAGCATCGCACCGCAAATAAAGCAACTCCGTCGCG
GTTTGATACTTAACTTACCGACGAACGGCCTTTCCACTCTGGCCGCGGCCATCTATACAC
TGCTCAGACTCGGTGACACTACAGAACAAAGCGACTACGTTTAGCGGCCCACCCAACCTC
CAGGCGCTGCCCGGCCCTTCGAGCCAAACGCGAAGCTTCAATATCAGCGCAAACGATGTT
CCGGCAAGAGGAGCAGCCAAAGACTGGCGTAAGACAGTTTGGCACGCACACGACTGGCAA
GGTCGACCACATGCTCGGCACGCATGCGACCGTGCGGCCAGAGTACAAAGATCCACCTCC
CAAGCGCACTGTCCCGACTTCTCAGCTAGAGGCTGTGCGCAATATCGAGACGCAATACAT
CAAAGCACGCAAGGCTGCGGAGGACGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002992A_C01 KCC002992A_c01
         (447 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA13427.1| QAH/OAS sulfhydrylase [Thermus aquaticus]              35  0.18
dbj|BAC87625.1| unnamed protein product [Homo sapiens]                 35  0.18
emb|CAE04498.1| OSJNBb0059K02.8 [Oryza sativa (japonica cultivar...    35  0.23
ref|XP_304681.1| hypothetical protein XP_304681 [Homo sapiens]         33  0.68
ref|NP_502409.1| putative protein (4N343) [Caenorhabditis elegan...    33  0.88

>dbj|BAA13427.1| QAH/OAS sulfhydrylase [Thermus aquaticus]
          Length = 422

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
 Frame = +2

Query: 92  FHSGRGHLYTAQTR*HYRTKRLRLAAHPTSRRCPALRAKREAS--------------ISA 229
           F +G G++Y  Q     R    RL A   +    AL + + A+              ++A
Sbjct: 46  FATGEGYVYARQKDPTARALEERLKALEGADYAVALASGQAATFAALLALLRQGDEVVAA 105

Query: 230 QTMFRQEEQPKTGVRQFGTHTTGKVDHMLGTHATVRPEYKDPPPKR 367
           + +FR +E PK+G         G    +LG H  VR  Y DP P R
Sbjct: 106 RGLFRGQEPPKSG---------GFSARVLGPHGGVRVRYVDPEPDR 142

>dbj|BAC87625.1| unnamed protein product [Homo sapiens]
          Length = 706

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 19/53 (35%), Positives = 28/53 (51%)
 Frame = -2

Query: 401 CAQPLAEKSGQCAWEVDLCTLAARSHACRACGRPCQSCACQTVLRQSLAAPLA 243
           C  P  +  G CA  + +  L A   + R CG PCQS  C+ +LR +L A ++
Sbjct: 248 CCVP-GDAQGGCAG-ICVRVLCAGRRSGRPCGHPCQSAVCRAMLRAALRASMS 298

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
 Frame = -2

Query: 341 LAARSHACRACGRPCQSCACQTVLRQSLAAPLA-------GTSFALILKLRVWLEGPGSA 183
           L A   + + CG PCQS  C+ +LR ++ A ++              +++RV   G  S 
Sbjct: 422 LCAGRQSGQPCGHPCQSAVCRAMLRAAVQASMSECCVPGDSQGSRAGIRVRVLCAGRRSG 481

Query: 182 WRLGGPLNVVALFCSV------TESEQCIDGRGQSGKA 87
              G P        ++      + SE C+ G  Q G+A
Sbjct: 482 QPCGHPCQSAVCRATLRAAVRASMSECCVPGDAQGGRA 519

 Score = 33.1 bits (74), Expect = 0.88
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
 Frame = -2

Query: 401 CAQPLAEKSGQCAWEVDLCTLAARSHACRACGRPCQSCACQTVLRQSLAAPLA------- 243
           C  P   + G     V +  L A   + R CG PCQS  C+  LR +L A ++       
Sbjct: 40  CCVPGEAQGGPAGIRVRV--LCAGRCSGRPCGHPCQSAVCRAELRAALRASMSECCVPGD 97

Query: 242 GTSFALILKLRVWLEGPGSAWRLGGPLNVVALFCSV------TESEQCIDGRGQSGKA 87
                  + +RV   G  S    G P        ++      + SE C+ G  Q G A
Sbjct: 98  AQGGRAGIHVRVLCAGRQSGQPCGHPCQSAVCRATLRAAVRASMSECCVPGGAQGGPA 155

 Score = 33.1 bits (74), Expect = 0.88
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
 Frame = -2

Query: 401 CAQPLAEKSGQCAWEVDLCTLAARSHACRACGRPCQSCACQTVLRQSLAA-------PLA 243
           C  P   + G+    V +  L A   + + CG PCQS  C+ +LR ++ A       P  
Sbjct: 508 CCVPGDAQGGRAGIHVRV--LCAGRQSGQPCGHPCQSAVCRAMLRAAVRASVSECCVPGD 565

Query: 242 GTSFALILKLRVWLEGPGSAWRLGGPLN------VVALFCSVTESEQCIDGRGQSGKA 87
                L +++RV   G  S    G P         +      + SE C+ G  Q  +A
Sbjct: 566 AQGGRLGIRVRVLCAGRLSGRPCGHPCQRSVCRATLRAAVRASVSECCVPGDSQGSRA 623

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 341 LAARSHACRACGRPCQSCACQTVLRQSLAAPLA 243
           L A   + R CG PCQS  C+  LR +L A ++
Sbjct: 162 LCAGRSSGRPCGHPCQSAVCRAELRAALRASVS 194

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (59%)
 Frame = -2

Query: 341 LAARSHACRACGRPCQSCACQTVLRQSLAA 252
           L AR  + R CG PCQS  C+  LR ++ A
Sbjct: 318 LCARRCSGRPCGHPCQSAVCRAELRAAVWA 347

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
 Frame = -2

Query: 401 CAQPLAEKSGQCAWEVDLCTLAARSHACRACGRPCQSCACQTVLRQSLAA-------PLA 243
           C  P   + G+    V +     RS   R CG  CQS  C+T LR +L A       P  
Sbjct: 196 CCVPGDAQGGRAGIHVRVLCAGRRSG--RPCGHLCQSAVCRTKLRAALRASVSECCVPGD 253

Query: 242 GTSFALILKLRVWLEGPGSAWRLGGPLN------VVALFCSVTESEQCIDGRGQSGKA 87
                  + +RV   G  S    G P        ++      + SE C+ G  Q G A
Sbjct: 254 AQGGCAGICVRVLCAGRRSGRPCGHPCQSAVCRAMLRAALRASMSECCVPGDAQGGPA 311

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 317 RACGRPCQSCACQTVLRQSLAAPLA 243
           R CG PCQS  C+  LR ++ A ++
Sbjct: 638 RPCGHPCQSAVCRATLRAAVWASVS 662

>emb|CAE04498.1| OSJNBb0059K02.8 [Oryza sativa (japonica cultivar-group)]
          Length = 508

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 385 LRSRDSALGRWIFVLWPHGRMRAEHVVDL 299
           ++ ++ AL RWIF LW HGR+RA+  + L
Sbjct: 144 IKDQEVALERWIFWLWVHGRIRAKQKIIL 172

>ref|XP_304681.1| hypothetical protein XP_304681 [Homo sapiens]
          Length = 267

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 30/110 (27%), Positives = 43/110 (38%), Gaps = 2/110 (1%)
 Frame = +2

Query: 89  PFHSGRGHLYTAQTR*HYRTKRLRLAAHPTSRRCPALRAKREASISAQTMFRQEEQP--K 262
           P   G G      T   +R+ R   A     +R P  RA R  +    T +R  +Q   +
Sbjct: 4   PVARGLGGAPAHTTATGFRSAR---AGRRKEKRRPGRRAARLEATPRSTRYRDSKQTLQQ 60

Query: 263 TGVRQFGTHTTGKVDHMLGTHATVRPEYKDPPPKRTVPTSQLEAVRNIET 412
           TGV++ GT T  + +   G   +  P Y+      TVP   L   R   T
Sbjct: 61  TGVQRLGTRTRRRPERSQGRGTSTTPRYE------TVPRPHLRKSRPYST 104

>ref|NP_502409.1| putative protein (4N343) [Caenorhabditis elegans]
            gi|7505555|pir||T23472 hypothetical protein K08E7.5 -
            Caenorhabditis elegans gi|3878414|emb|CAB01228.1|
            Hypothetical protein K08E7.5 [Caenorhabditis elegans]
          Length = 1221

 Score = 33.1 bits (74), Expect = 0.88
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 443  PPQPCVL*CIASRYCAQPLAEKSGQCAWEVDLCTLAARSHACRACGRPCQSCACQTVLRQ 264
            PP PC   C   + C QP    +  C      C++  +      CGR C SC C+  + +
Sbjct: 986  PPIPC---CPQPKICCQP----APVCLPPPTCCSINFKLPTIPICGRACPSCPCRRRMHK 1038

Query: 263  S 261
            S
Sbjct: 1039 S 1039



EST assemble image


clone accession position
1 LC071f06_r AV624005 1 447
2 MX217a04_r BP089984 5 301
3 MX017h05_r BP086831 5 399
4 MX017c07_r BP086810 8 396




Chlamydomonas reinhardtii
Kazusa DNA Research Institute