KCC002989A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002989A_C01 KCC002989A_c01
ggtgggccgccgcaagcgcgccgccggcaagcgtgggactggctggaacagcaacgcgcg
cgtggcggctggatggtgccGCCGGAGCGCGCGCTGGTGCCCATCTCCGTGTACGCTGAG
TCGCTGCGCAACTGAGTCTTTAGCGCGGCGCTTCGGTGCGGTGGCAGACTGTTCTATGGA
GCGGGCTGCTGTACTGGACTGGGCTTGGCGAGGGCAGTTAGCTCAGTAGTCGTGTGCAGT
GGCTGGCCTGGGGTTGCAGGCCGCAGCAGGCATGCGCACCGTGCGACGACGAATGATCTG
CATCGGTCTGCCATGCGTGTATTTAAACTGGGATTGCTGCATTCATGTCTTCCTCGCGTT
GCGGCCGTATGAGGTGCGCGTTTTGCGACTCATTGCGCCTAAGCATTCCCCAGCGGATAC
AGGTGGGTCGTTCGAAGCTTGCTGCCTTGTTGTGCGAGAGTGCTCGAGTGCATTCGCGTg
ccattgccagaggaggggtagctagcttaccggttgtcgcgccaaagtatgcagacatct
ctattgctctccgagcctg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002989A_C01 KCC002989A_c01
         (559 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB89059.1| PDI-like protein [Oryza sativa (japonica cultiva...    37  0.23
emb|CAC69156.2| possible cell wall surface anchor family protein...    35  0.68
ref|XP_231287.2| similar to MLL5 [Rattus norvegicus]                   35  0.68
gb|AAD27637.1|AF128457_11 hypothetical protein [Oryza sativa sub...    35  0.68
ref|NP_014824.1| Homolog of human WASP, proline-rich protein; La...    35  0.89

>dbj|BAB89059.1| PDI-like protein [Oryza sativa (japonica cultivar-group)]
          Length = 390

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 30/90 (33%), Positives = 38/90 (41%), Gaps = 11/90 (12%)
 Frame = -3

Query: 248 GQPLHTTTELTAL---------AKPSPVQQPAP*NSLPPHRSAALKTQLRSDSAYTEMGT 96
           G PL    EL  L           P+P   PAP   +PP  + A        +A  +M T
Sbjct: 18  GPPLDGEAELPPLLLSFTAPPPGAPAPDPDPAPVGGVPPPLAVA--------AATPDMAT 69

Query: 95  SARSGGTIQPP--RARCCSSQSHACRRRAC 12
           S+R+GGT Q P      C SQ+    RR C
Sbjct: 70  SSRAGGTPQKPDHPPTRCRSQAKVWFRRHC 99

>emb|CAC69156.2| possible cell wall surface anchor family protein [Leishmania major]
          Length = 2026

 Score = 35.0 bits (79), Expect = 0.68
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
 Frame = -3

Query: 380 RAPHTAATRGRHECSNPSLNTRMADRCRSFVV----------------ARCACL--LRPA 255
           +APHT+ T GR EC+  SL+T  A   R                    A+C+ +  L P 
Sbjct: 446 QAPHTSGTVGRPECALHSLSTPEARTLRGCAKPAPCSDATLASGAVGDAQCSWIDTLSPL 505

Query: 254 TPGQPLHTTTELTALAKPSPVQQPAP*NSLPPHRSAALKTQLRSDSAYTEMGTSARSGGT 75
           TP     T +   + + P P++  AP   L   R    +         +  G +A++ G+
Sbjct: 506 TPPPTAATASVSPSSSPPLPIEHSAPHQQLRRQRHGRRRLS-------SSPGAAAQAEGS 558

Query: 74  IQPPRA 57
             P  A
Sbjct: 559 TSPDAA 564

>ref|XP_231287.2| similar to MLL5 [Rattus norvegicus]
          Length = 1877

 Score = 35.0 bits (79), Expect = 0.68
 Identities = 27/95 (28%), Positives = 38/95 (39%)
 Frame = -3

Query: 287  VARCACLLRPATPGQPLHTTTELTALAKPSPVQQPAP*NSLPPHRSAALKTQLRSDSAYT 108
            VA     +   TPG  +H+ T    L  P P   PAP +  PPH S  L++     + + 
Sbjct: 1668 VAHVVGTVHAVTPGSHIHSQTVGHHLPPPPPPPGPAPHHHPPPHPSTGLQS---LQAQHQ 1724

Query: 107  EMGTSARSGGTIQPPRARCCSSQSHACRRRACGGP 3
             +  SA       PP A    S  H+   +A   P
Sbjct: 1725 HVVNSAPPPPPPPPPPASVLVSGHHSASGQALHHP 1759

>gb|AAD27637.1|AF128457_11 hypothetical protein [Oryza sativa subsp. indica]
          Length = 379

 Score = 35.0 bits (79), Expect = 0.68
 Identities = 31/81 (38%), Positives = 36/81 (44%)
 Frame = -1

Query: 259 LQPQASHCTRLLS*LPSPSPVQYSSPLHRTVCHRTEAPR*RLSCAATQRTRRWAPARAPA 80
           ++P AS     L  L  P P   S  LHRT  HR  A   R +  A  R  R AP RAP 
Sbjct: 17  IKPTASADPARLLQLARPHP---SFTLHRTAPHRALATTARRAPDAPGRRSRVAPRRAPT 73

Query: 79  APSSRHARVAVPASPTLAGGA 17
           AP        +P +  LA GA
Sbjct: 74  APGH-----VLPGTLFLAVGA 89

>ref|NP_014824.1| Homolog of human WASP, proline-rich protein; Las17p [Saccharomyces
           cerevisiae] gi|2498506|sp|Q12446|LA17_YEAST Proline-rich
           protein LAS17 gi|2133063|pir||S62057 proline-rich
           protein LAS17 - yeast (Saccharomyces cerevisiae)
           gi|1101757|dbj|BAA11386.1| prolin rich protein
           [Saccharomyces cerevisiae] gi|1420437|emb|CAA99390.1|
           LAS17 [Saccharomyces cerevisiae]
          Length = 633

 Score = 34.7 bits (78), Expect = 0.89
 Identities = 23/72 (31%), Positives = 29/72 (39%), Gaps = 3/72 (4%)
 Frame = -3

Query: 263 RPATPGQPLHTTTELTALAKPSPVQQP--AP*NSLPPHRSAALKT-QLRSDSAYTEMGTS 93
           RP  P  P+ TTTE + +  P+P   P   P    PPHR     T      ++     T 
Sbjct: 322 RPVPPPPPMRTTTEGSGVRLPAPPPPPRRGPAPPPPPHRHVTSNTLNSAGGNSLLPQATG 381

Query: 92  ARSGGTIQPPRA 57
            R      PPRA
Sbjct: 382 RRGPAPPPPPRA 393



EST assemble image


clone accession position
1 LC070a09_r AV623886 1 444
2 MXL053c02_r BP096129 85 559




Chlamydomonas reinhardtii
Kazusa DNA Research Institute