KCC002988A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002988A_C01 KCC002988A_c01
CACGCTTGCAGGCATTACAGGTGGCATTTATTCCTCCCTTCATTTGCAGCCTAAACAATG
GCATGCCTTGCACCCCTTTGGCTTTCCACGTGCCGGTGCAAGACAGGAGTCTTATGTGCA
GTCAAAGTCTGTGCGGCACCGCACATGCCTCACACCACACATGCTTTCCGCACGGCGTCA
GAGCATGAAGCTCTTCATATCAATACCACACATGAATGATCATAGCCAGGGCAAGCCTCA
CAGCTGGTGCACTCCCCTCAGTCCTAGTCAAGCATAACGCGCGTCAGTCGGTATCCTATG
TACGCGTCTGGATGCGGCCGAGTCACAGCTTTAGTAGCAATACTCAAGAGATCACATGGC
AAGCGCCATCAAGATAGCTAGCTGGGTACTCACGGGTCACAGCCTGAAACAACCCGACCA
TTTATTTTTCACGAGCAAGATGGGAGAGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002988A_C01 KCC002988A_c01
         (450 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM48433.1| RE61305p [Drosophila melanogaster]                      32  2.6
ref|NP_733239.1| CG4976-PA [Drosophila melanogaster] gi|26080443...    32  2.6
gb|EAA36723.1| GLP_149_5094_5384 [Giardia lamblia ATCC 50803]          31  3.3
ref|NP_584553.1| GATA ZINC FINGER TRANSCRIPTION FACTOR 3 [Enceph...    31  3.3
gb|AAO72572.1| putative protein kinase [Oryza sativa (japonica c...    31  3.3

>gb|AAM48433.1| RE61305p [Drosophila melanogaster]
          Length = 1016

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 63  MPCTPL----AFHVPVQDRSLMCSQSLCGTAHASHHTCFPHGVRA*SSSY 200
           +P TP     + H P++D+ L CSQ +CG     H +C  +  +A SS +
Sbjct: 467 VPSTPRKEDSSSHTPIEDKLLTCSQPMCGKRF--HTSCCKYWPQASSSKH 514

>ref|NP_733239.1| CG4976-PA [Drosophila melanogaster] gi|26080443|ref|NP_651598.1|
            CG4976 gene product [Drosophila melanogaster]
            gi|29427833|sp|Q8MT36|MES4_DROME Potential histone
            methyltransferase Mes-4 (Maternal-effect sterile 4)
            gi|23172478|gb|AAF56762.2| CG4976-PA [Drosophila
            melanogaster]
          Length = 1427

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 63   MPCTPL----AFHVPVQDRSLMCSQSLCGTAHASHHTCFPHGVRA*SSSY 200
            +P TP     + H P++D+ L CSQ +CG     H +C  +  +A SS +
Sbjct: 878  VPSTPRKEDSSSHTPIEDKLLTCSQPMCGKRF--HTSCCKYWPQASSSKH 925

>gb|EAA36723.1| GLP_149_5094_5384 [Giardia lamblia ATCC 50803]
          Length = 96

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/41 (48%), Positives = 24/41 (57%), Gaps = 3/41 (7%)
 Frame = -2

Query: 251 CTSCEAC--PGYDHS-CVVLI*RASCSDAVRKACVV*GMCG 138
           CTSC++   P  D S CVV      CSD   K+CVV G+CG
Sbjct: 6   CTSCDSGKKPNKDGSGCVV------CSDTNCKSCVVDGVCG 40

>ref|NP_584553.1| GATA ZINC FINGER TRANSCRIPTION FACTOR 3 [Encephalitozoon cuniculi]
           gi|19068589|emb|CAD25057.1| GATA ZINC FINGER
           TRANSCRIPTION FACTOR 3 [Encephalitozoon cuniculi]
          Length = 341

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 11/65 (16%)
 Frame = -3

Query: 169 GKHVWCEACAVPHRL*LHIRLLSCTGTWKAKGVQG-----------MPLFRLQMKGGINA 23
           GK + C AC +  +L    R  + T   + K ++G           +P F L+ KG  + 
Sbjct: 144 GKSLLCNACGLYQKLHGRTRPYTVTAGGRTKALKGGHERIICVSCNLPFFTLESKGTSSH 203

Query: 22  TCNAC 8
            CN C
Sbjct: 204 LCNGC 208

>gb|AAO72572.1| putative protein kinase [Oryza sativa (japonica cultivar-group)]
          Length = 382

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
 Frame = +2

Query: 98  ARQESYVQSKSVRHRTCLTPHMLSARRQSMKLF------ISIPHMNDHSQGKP 238
           AR  SY+ SK + HR   T +ML AR++ +K+       +   + +D ++GKP
Sbjct: 207 ARGLSYLHSKKIVHRDVKTENMLLARQELVKIADFGVARLEASNPSDMTRGKP 259



EST assemble image


clone accession position
1 LC069b09_r AV623827 1 492
2 LC070e05_r AV623921 1 471




Chlamydomonas reinhardtii
Kazusa DNA Research Institute