KCC002985A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002985A_C01 KCC002985A_c01
ggcgtcggcctaccccgcactggactccctagcaaacaaggtgtcttctccgcacctgga
gcgggtgcggcgcatcaagaACAACCTGGTGCGGCTGACCACGCGGGTGGAGACGGTGCG
AGAGGTGCTGGAGAAGTTCCTGGACGACGACAGCGACATGCACGAGATGAACCTCACCGC
CAAGGAGCTGCACGAGATAGAGGAGCGCCGGCAGCTGGAGCAGGAGAACAACGTGGACGC
CCACTCCACGGTGAGCACCACGGGCAGCCGCAGCAGCGGCAGCAGCAGCAGCGCCTCCTC
GGACAGCAGCGTGGAGGAGGCGGAGACGGCGGTGGTGGAGATGTTGCTGGAGACCTACTT
CATGCACGTCGACAACACCTACAACAAGCTGCAGACCCTGCACGAGTACATTGGCGACAC
GGAGGACCTGGTGAACATCAAGCTGGACCAGCACCGCAACCAGCTCATCACCATCGACCT
CATCCTCACGGCCTTCACCACCGTGCTGGCCATGATGACCGTTGTGGGAGCCTGGTTCGG
CATGAACCTGGACAGCGGGCTGCAGCAGGCGCCGGGCCTGTTCACGCAGGTGGCCCTGGG
CTCCTCCATCATCGGTGTGGGGCTGCTGATGCTGTTCGTGTTCTGGCTGTGGCGCGCCAA
GCTCATCATCTACTAGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002985A_C01 KCC002985A_c01
         (678 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_851269.1| expressed protein [Arabidopsis thaliana] gi|101...   155  5e-37
ref|NP_201261.2| expressed protein [Arabidopsis thaliana] gi|108...   154  1e-36
gb|AAN73217.1| MRS2-7 [Arabidopsis thaliana]                          150  2e-35
ref|NP_565247.1| expressed protein [Arabidopsis thaliana] gi|253...   150  2e-35
gb|AAM62917.1| unknown [Arabidopsis thaliana] gi|25360983|gb|AAN...   149  3e-35

>ref|NP_851269.1| expressed protein [Arabidopsis thaliana]
           gi|10178059|dbj|BAB11423.1| contains similarity to
           unknown protein~emb|CAB89361.1~gene_id:MUB3.8
           [Arabidopsis thaliana] gi|17529326|gb|AAL38890.1|
           unknown protein [Arabidopsis thaliana]
           gi|20465371|gb|AAM20089.1| unknown protein [Arabidopsis
           thaliana] gi|21536628|gb|AAM60960.1| putative magnesium
           transporter [Arabidopsis thaliana]
           gi|25360813|gb|AAN73212.1| MRS2-2 [Arabidopsis thaliana]
          Length = 394

 Score =  155 bits (392), Expect = 5e-37
 Identities = 86/212 (40%), Positives = 133/212 (62%)
 Frame = +2

Query: 5   SAYPALDSLANKVSSPHLERVRRIKNNLVRLTTRVETVREVLEKFLDDDSDMHEMNLTAK 184
           +AYPALD L +K+SS +L+RVR++K+ + RLT RV+ VR+ LE+ LDDD DM ++ L+ K
Sbjct: 174 AAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK 233

Query: 185 ELHEIEERRQLEQENNVDAHSTVSTTGSRSSGSSSSASSDSSVEEAETAVVEMLLETYFM 364
                     + + N    ++T  T GS+ S +S ++ +    +E +   +EMLLE YFM
Sbjct: 234 LSSASSPISSIGEPN---WYTTSPTIGSKISRASRASLATVHGDENDVEELEMLLEAYFM 290

Query: 365 HVDNTYNKLQTLHEYIGDTEDLVNIKLDQHRNQLITIDLILTAFTTVLAMMTVVGAWFGM 544
            +D+T N+L TL EYI DTED +NI+LD HRNQLI ++L+L++ T  L+M ++V   FGM
Sbjct: 291 QIDSTLNRLTTLREYIDDTEDYINIQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGM 350

Query: 545 NLDSGLQQAPGLFTQVALGSSIIGVGLLMLFV 640
           N+        G   +  +G  + G   +++FV
Sbjct: 351 NIPYTWNDGHGYMFKYVVG--LTGTLCVVVFV 380

>ref|NP_201261.2| expressed protein [Arabidopsis thaliana]
           gi|10880271|emb|CAC13982.1| putative magnesium
           transporter [Arabidopsis thaliana]
          Length = 378

 Score =  154 bits (389), Expect = 1e-36
 Identities = 81/182 (44%), Positives = 122/182 (66%)
 Frame = +2

Query: 5   SAYPALDSLANKVSSPHLERVRRIKNNLVRLTTRVETVREVLEKFLDDDSDMHEMNLTAK 184
           +AYPALD L +K+SS +L+RVR++K+ + RLT RV+ VR+ LE+ LDDD DM ++ L+ K
Sbjct: 174 AAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK 233

Query: 185 ELHEIEERRQLEQENNVDAHSTVSTTGSRSSGSSSSASSDSSVEEAETAVVEMLLETYFM 364
                     + + N    ++T  T GS+ S +S ++ +    +E +   +EMLLE YFM
Sbjct: 234 LSSASSPISSIGEPN---WYTTSPTIGSKISRASRASLATVHGDENDVEELEMLLEAYFM 290

Query: 365 HVDNTYNKLQTLHEYIGDTEDLVNIKLDQHRNQLITIDLILTAFTTVLAMMTVVGAWFGM 544
            +D+T N+L TL EYI DTED +NI+LD HRNQLI ++L+L++ T  L+M ++V   FGM
Sbjct: 291 QIDSTLNRLTTLREYIDDTEDYINIQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGM 350

Query: 545 NL 550
           N+
Sbjct: 351 NI 352

>gb|AAN73217.1| MRS2-7 [Arabidopsis thaliana]
          Length = 386

 Score =  150 bits (379), Expect = 2e-35
 Identities = 92/221 (41%), Positives = 133/221 (59%), Gaps = 2/221 (0%)
 Frame = +2

Query: 5   SAYPALDSLANKVSSPHLERVRRIKNNLVRLTTRVETVREVLEKFLDDDSDMHEMNLTAK 184
           SAYPALD L  K+SS +LERVR++K+ + RLT RV+ VR+ LE+ LDDD DM ++ LT K
Sbjct: 165 SAYPALDELTLKISSRNLERVRKLKSAMTRLTARVQKVRDELEQLLDDDGDMADLYLTRK 224

Query: 185 ELHEIEERRQLEQENNVDAHSTVSTTGSR-SSGSSSSASSDSSVEEAETAVVEMLLETYF 361
               +     +   +    + T  T GS  S  S  S ++    +E +   +EMLLE YF
Sbjct: 225 L---VGASSSVSVSDEPIWYPTSPTIGSMISRASRMSLATVRGDDETDVEELEMLLEAYF 281

Query: 362 MHVDNTYNKLQTLHEYIGDTEDLVNIKLDQHRNQLITIDLILTAFTTVLAMMTVVGAWFG 541
           M +D+T NKL  L EYI DTED +NI+LD HRNQLI ++L+L+A T  +++ +++   FG
Sbjct: 282 MQIDSTLNKLTELREYIDDTEDYINIQLDNHRNQLIQLELMLSAGTVCVSVYSMIAGIFG 341

Query: 542 MNLDSGLQQAPG-LFTQVALGSSIIGVGLLMLFVFWLWRAK 661
           MN+ +      G +F  V    S+ G   ++LFV  L  A+
Sbjct: 342 MNIPNTWNHDHGYIFKWVV---SLTGTFCIVLFVIILSYAR 379

>ref|NP_565247.1| expressed protein [Arabidopsis thaliana] gi|25352404|pir||H96841
           hypothetical protein F23A5.26 [imported] - Arabidopsis
           thaliana gi|6503302|gb|AAF14678.1|AC011713_26 Is a
           member of PF|01544 CorA-like Mg2+ transporter protein
           family.  ESTs gb|Z48392 and gb|Z48391 come from this
           gene. [Arabidopsis thaliana]
          Length = 443

 Score =  150 bits (378), Expect = 2e-35
 Identities = 96/240 (40%), Positives = 134/240 (55%), Gaps = 22/240 (9%)
 Frame = +2

Query: 8   AYPALDSLANKVSSPHLERVRRIKNNLVRLTTRVETVREVLEKFLDDDSDMHEMNLTAKE 187
           AYP LD L +K+S+ +LER RR+K+ LV LT RV+ VR+ +E+ +DDD DM EM LT K+
Sbjct: 205 AYPLLDELTSKISTLNLERARRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKK 264

Query: 188 LH---EIEERRQLEQENNVDAHS-------------------TVSTTGSRSSGSSSSASS 301
                 +   + L      D  S                   ++S   SR   + SS  +
Sbjct: 265 KRMEGSLYGDQSLPVYRTNDCFSLSAPVSPVSSPPESRRLEKSLSIVRSRHDSARSSEDA 324

Query: 302 DSSVEEAETAVVEMLLETYFMHVDNTYNKLQTLHEYIGDTEDLVNIKLDQHRNQLITIDL 481
             ++EE     +EMLLE YF+ +D+T NKL +L EYI DTED +NI+LD  RNQLI  +L
Sbjct: 325 TENIEE-----LEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFEL 379

Query: 482 ILTAFTTVLAMMTVVGAWFGMNLDSGLQQAPGLFTQVALGSSIIGVGLLMLFVFWLWRAK 661
           +LT  T V+A+  VV   FGMN +    + PG F  V    +I GV  L++F+ +LW  K
Sbjct: 380 LLTTATFVVAIFGVVAGIFGMNFEIDFFEKPGAFKWVL---AITGVCGLVVFLAFLWYYK 436

>gb|AAM62917.1| unknown [Arabidopsis thaliana] gi|25360983|gb|AAN73219.1| MRS2-10
           [Arabidopsis thaliana]
          Length = 443

 Score =  149 bits (377), Expect = 3e-35
 Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 22/237 (9%)
 Frame = +2

Query: 8   AYPALDSLANKVSSPHLERVRRIKNNLVRLTTRVETVREVLEKFLDDDSDMHEMNLTAKE 187
           AYP LD L +K+S+ +LER RR+K+ LV LT RV+ VR+ +E+ +DDD DM EM LT K+
Sbjct: 205 AYPLLDELTSKISTLNLERARRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKK 264

Query: 188 LH---EIEERRQLEQENNVDAHS-------------------TVSTTGSRSSGSSSSASS 301
                 +   + L      D  S                   ++S   SR   + SS  +
Sbjct: 265 KRMEGSLYGDQSLPVYRTNDCFSLSAPVSPVSSPPESRRLEKSLSIVRSRHDSARSSEDA 324

Query: 302 DSSVEEAETAVVEMLLETYFMHVDNTYNKLQTLHEYIGDTEDLVNIKLDQHRNQLITIDL 481
             ++EE     +EMLLE YF+ +D+T NKL +L EYI DTED +NI+LD  RNQLI  +L
Sbjct: 325 TENIEE-----LEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFEL 379

Query: 482 ILTAFTTVLAMMTVVGAWFGMNLDSGLQQAPGLFTQVALGSSIIGVGLLMLFVFWLW 652
           +LT  T V+A+  VV   FGMN +    + PG F  V    +I GV  L++F+ +LW
Sbjct: 380 LLTTATFVVAIFGVVAGIFGMNFEIDFFEKPGAFKWVL---AITGVCGLVVFLAFLW 433



EST assemble image


clone accession position
1 MX007d05_r BP086367 1 476
2 LC068c11_r AV623763 151 678




Chlamydomonas reinhardtii
Kazusa DNA Research Institute