KCC002984A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002984A_C01 KCC002984A_c01
ctttCACGGGAATTAGGGTCGCCTGGCAAGAATGCAGGCTCTCAGCGCAAACCGCAATGC
TGTGCGCCCGGTCGCCAAGAGCACTCGCTCTGTGGTGTCGGTGGCCCGCCCTTTCGGCAC
CAAATGCGTGCGCCCAGCCCTAGGCCGCGTGGCGCTGAAGGCCATGAACCAGCAGGCCAC
CGAGGAGAAGAGCGACACCAACAGCGCTGCTCGCCAGATGCTGGGCATGAAGGGCGCTGC
CTTGGAGACGGACATCTGGAAAATCCGCGTGCAGCTTACCAAGCCTGTGACTTGGATCCC
CCTCATTTGGGGTGTTGCTTGCGGTGCTGCCGCTTCGGGCCACTACCAGTGGAACAACCC
CACCCAAATTGCGCAGCTGCTGACCTGCATGATGATGTCGGGCCCCTTCCTGACTGGCTA
CACCCAGACCATTAACGACTGGTATGACCGCGAGATTGACGCAATCAACGAGCCCTACCG
CCCCATCCCCTCGGGCCGCATCTCGGAGCGCGACGTGATCGTGCAGATCTGGGTGCTGCT
GCTAGGCGGCATCGGCCTGGCCTACACCCTGGACCAGTGGGCCGGCCACACCACGCCCGT
GATGCTGCAGCTGACCATCTTCGGCTCCTTCATCTCCTACATCTACTCGGCGCCGGCGCT
CAAGCTCAAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002984A_C01 KCC002984A_c01
         (671 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_190750.1| chlorophyll synthetase, putative [Arabidopsis t...   236  2e-61
emb|CAB85464.1| chlorophyll synthase [Avena sativa]                   228  6e-59
ref|NP_894105.1| chlorophyll synthase 33 kD subunit [Prochloroco...   227  1e-58
gb|AAP79186.1| chlorophyll synthetase [Bigelowiella natans]           224  7e-58
ref|ZP_00107657.1| COG0382: 4-hydroxybenzoate polyprenyltransfer...   224  1e-57

>ref|NP_190750.1| chlorophyll synthetase, putative [Arabidopsis thaliana]
           gi|2129675|pir||S60222 probable chlorophyll synthetase
           G4 [imported] - Arabidopsis thaliana
           gi|972938|gb|AAA96740.1| putative chlorophyll synthetase
           gi|3068709|gb|AAC14409.1| putative chlorophyll
           synthetase [Arabidopsis thaliana]
           gi|14596067|gb|AAK68761.1| putative chlorophyll
           synthetase [Arabidopsis thaliana]
           gi|20148305|gb|AAM10043.1| chlorophyll synthetase
           [Arabidopsis thaliana]
          Length = 387

 Score =  236 bits (603), Expect = 2e-61
 Identities = 114/182 (62%), Positives = 137/182 (74%), Gaps = 7/182 (3%)
 Frame = +2

Query: 146 RVALKAMNQQATEEKSDT-------NSAARQMLGMKGAALETDIWKIRVQLTKPVTWIPL 304
           R  ++A      + KS T        S+  Q+LG+KGA+ ET+ WKIR+QLTKPVTW PL
Sbjct: 53  RFVVRAAETDTDKVKSQTPDKAPAGGSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPL 112

Query: 305 IWGVACGAAASGHYQWNNPTQIAQLLTCMMMSGPFLTGYTQTINDWYDREIDAINEPYRP 484
           +WGV CGAAASG++ W  P  +A+ + CMMMSGP LTGYTQTINDWYDR+IDAINEPYRP
Sbjct: 113 VWGVVCGAAASGNFHWT-PEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRP 171

Query: 485 IPSGRISERDVIVQIWVLLLGGIGLAYTLDQWAGHTTPVMLQLTIFGSFISYIYSAPALK 664
           IPSG ISE +VI Q+WVLLLGG+G+A  LD WAGHTTP +  L + GS +SYIYSAP LK
Sbjct: 172 IPSGAISEPEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLK 231

Query: 665 LK 670
           LK
Sbjct: 232 LK 233

>emb|CAB85464.1| chlorophyll synthase [Avena sativa]
          Length = 378

 Score =  228 bits (581), Expect = 6e-59
 Identities = 118/221 (53%), Positives = 145/221 (65%), Gaps = 5/221 (2%)
 Frame = +2

Query: 23  LARMQALSANRNAVRPVAKSTRS-----VVSVARPFGTKCVRPALGRVALKAMNQQATEE 187
           LA   A S++    RP  +   S      ++  R F   C   A  +   K       ++
Sbjct: 7   LAAAAATSSSSATFRPPLRFLSSPPSSLTLNRRRSFPVVCAADADAKETTK--KPTIPDK 64

Query: 188 KSDTNSAARQMLGMKGAALETDIWKIRVQLTKPVTWIPLIWGVACGAAASGHYQWNNPTQ 367
                S+  Q+LG+KGA  ET+IWKIR+QLTKPVTW PL+WGV CGAAASG++ W     
Sbjct: 65  APAAGSSFNQLLGIKGAKQETNIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWT-VED 123

Query: 368 IAQLLTCMMMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGRISERDVIVQIWVLLLG 547
           + + + CM+MSGP LTGYTQTINDWYDR+IDAINEPYRPIPSG ISE +VI QIWVLLLG
Sbjct: 124 VTKSIVCMLMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENEVITQIWVLLLG 183

Query: 548 GIGLAYTLDQWAGHTTPVMLQLTIFGSFISYIYSAPALKLK 670
           G+GL   LD WAGH  P++  L + GS +SYIYSAP LKLK
Sbjct: 184 GLGLGALLDIWAGHDFPIIFYLALGGSLLSYIYSAPPLKLK 224

>ref|NP_894105.1| chlorophyll synthase 33 kD subunit [Prochlorococcus marinus str.
           MIT 9313] gi|33640658|emb|CAE20447.1| chlorophyll
           synthase 33 kD subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 336

 Score =  227 bits (578), Expect = 1e-58
 Identities = 109/156 (69%), Positives = 127/156 (80%)
 Frame = +2

Query: 203 SAARQMLGMKGAALETDIWKIRVQLTKPVTWIPLIWGVACGAAASGHYQWNNPTQIAQLL 382
           S ARQ+LG+KGA   T+IWK+R+QL KPVTWIPL+WGV CGAAASG YQW  P  +A   
Sbjct: 21  SDARQLLGIKGATGTTNIWKLRLQLMKPVTWIPLLWGVICGAAASGQYQWRVPDVLAAA- 79

Query: 383 TCMMMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGRISERDVIVQIWVLLLGGIGLA 562
            CM+MSGP LTGYTQTIND+YDREIDAINEPYRPIPSG I    V +QIW+LLLGG+ +A
Sbjct: 80  ACMVMSGPLLTGYTQTINDYYDREIDAINEPYRPIPSGAIPLTQVKLQIWMLLLGGLAVA 139

Query: 563 YTLDQWAGHTTPVMLQLTIFGSFISYIYSAPALKLK 670
           Y LD+WA HTTPV+L L + GSF+S+IYSAP LKLK
Sbjct: 140 YGLDRWAEHTTPVVLFLALGGSFVSFIYSAPPLKLK 175

>gb|AAP79186.1| chlorophyll synthetase [Bigelowiella natans]
          Length = 498

 Score =  224 bits (572), Expect = 7e-58
 Identities = 108/169 (63%), Positives = 130/169 (76%), Gaps = 8/169 (4%)
 Frame = +2

Query: 188 KSDTNSAARQMLGMKGAALETDIWKIRVQLTKPVTWIPLIWGVACGAAASGHYQ--WNNP 361
           +SD +S  RQ+LG++G +   +IWKIR+QL KPVTW+PLIWGV CGAAASG+Y   W+  
Sbjct: 173 ESDDDSDVRQLLGVRGGSKTDNIWKIRLQLMKPVTWVPLIWGVICGAAASGNYNAVWSGA 232

Query: 362 T------QIAQLLTCMMMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGRISERDVIV 523
                   + + L CM+++GP LTGYTQTINDWYDREIDAINEP RPIPSG I E +VI 
Sbjct: 233 PLEVCLEDLGKSLGCMVLAGPLLTGYTQTINDWYDREIDAINEPDRPIPSGAIKENEVIA 292

Query: 524 QIWVLLLGGIGLAYTLDQWAGHTTPVMLQLTIFGSFISYIYSAPALKLK 670
           QIW LLLGG+GLAY LDQWAGH  P++  L+I GSF+SYIYSAP LKLK
Sbjct: 293 QIWALLLGGLGLAYGLDQWAGHDFPMVTALSIGGSFVSYIYSAPPLKLK 341

>ref|ZP_00107657.1| COG0382: 4-hydroxybenzoate polyprenyltransferase and related
           prenyltransferases [Nostoc punctiforme]
          Length = 348

 Score =  224 bits (570), Expect = 1e-57
 Identities = 107/169 (63%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
 Frame = +2

Query: 167 NQQATEEKSDTNSAARQMLGMKGAAL-ETDIWKIRVQLTKPVTWIPLIWGVACGAAASGH 343
           N+QA    +D N+  RQ+LGMKGAA  ET IWKIR+QL KP+TWIPLIWGV CGAA+SG+
Sbjct: 25  NEQAIAS-ADRNAKTRQLLGMKGAAAGETSIWKIRLQLMKPITWIPLIWGVVCGAASSGN 83

Query: 344 YQWNNPTQIAQLLTCMMMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGRISERDVIV 523
           Y W     + ++LTCM+++GP +TGYTQ +ND+YDREIDAINEPYRPIPSG I    VI+
Sbjct: 84  YTWTLEN-VLKVLTCMLLAGPLMTGYTQILNDYYDREIDAINEPYRPIPSGAIPLPQVII 142

Query: 524 QIWVLLLGGIGLAYTLDQWAGHTTPVMLQLTIFGSFISYIYSAPALKLK 670
           QIWVLL+ G GLA+ LD W+GH  P +  + I GSFI+YIYSAP LKLK
Sbjct: 143 QIWVLLIAGYGLAFALDVWSGHEFPTITAIAIIGSFIAYIYSAPPLKLK 191



EST assemble image


clone accession position
1 MX216a04_r BP089919 1 307
2 MXL011f11_r BP093665 5 520
3 LC068c06_r AV623758 120 671




Chlamydomonas reinhardtii
Kazusa DNA Research Institute