Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002978A_C01 KCC002978A_c01
(531 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_776698.1| cholinergic receptor, nicotinic, gamma polypept... 38 0.071
gb|AAG49489.1| acetylcholine receptor gamma-subunit [Bos taurus] 37 0.16
sp|P20186|YT35_STRFR Hypothetical 35.5 kDa protein in transposon... 36 0.27
ref|ZP_00023022.1| COG3170: Tfp pilus assembly protein FimV [Ral... 36 0.35
ref|ZP_00051387.1| COG0532: Translation initiation factor 2 (IF-... 35 0.46
>ref|NP_776698.1| cholinergic receptor, nicotinic, gamma polypeptide [Bos taurus]
gi|113095|sp|P13536|ACHG_BOVIN Acetylcholine receptor
protein, gamma chain precursor gi|2119572|pir||I45847
acetylcholine receptor - bovine gi|162602|gb|AAA30351.1|
acetylcholine receptor
Length = 519
Score = 38.1 bits (87), Expect = 0.071
Identities = 23/64 (35%), Positives = 34/64 (52%)
Frame = -1
Query: 330 HGRLKLLSAVVQPQSLPEQLQNLCTPCRGLRLRQRLRPGLVVSALCRVNNKPDISPGPAW 151
H RL+ S+ P + E++ LC P L RQR R GLV +AL ++ P+ P W
Sbjct: 371 HPRLQNGSSSGWPITAGEEVA-LCLPRSELLFRQRQRNGLVRAALEKLEKGPESGQSPEW 429
Query: 150 CSAI 139
C ++
Sbjct: 430 CGSL 433
>gb|AAG49489.1| acetylcholine receptor gamma-subunit [Bos taurus]
Length = 77
Score = 37.0 bits (84), Expect = 0.16
Identities = 23/61 (37%), Positives = 32/61 (51%)
Frame = -1
Query: 330 HGRLKLLSAVVQPQSLPEQLQNLCTPCRGLRLRQRLRPGLVVSALCRVNNKPDISPGPAW 151
H RL+ S+ P + E++ LC P L RQR R GLV +AL ++ P+ P W
Sbjct: 18 HPRLQNGSSSGWPITAGEEVA-LCLPRSELLFRQRQRNGLVRAALEKLEKGPESGQSPEW 76
Query: 150 C 148
C
Sbjct: 77 C 77
>sp|P20186|YT35_STRFR Hypothetical 35.5 kDa protein in transposon Tn4556
gi|80759|pir||JQ0431 hypothetical 35.5K protein -
Streptomyces fradiae transposon Tn4556
gi|1196912|gb|AAA88561.1| unknown protein [Streptomyces
fradiae]
Length = 348
Score = 36.2 bits (82), Expect = 0.27
Identities = 38/118 (32%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Frame = +2
Query: 158 GPGEMSGLLFTRHKAETTSPGRKRCRSRNPRQGVQRFCSCSGRDWGCTTALSSL---SRP 328
GP +G +R +ET SPG + P+ CS GC TA SL RP
Sbjct: 182 GPDTRTGPRLSRSSSETRSPG----GTVQPKSPAPLAARCSASRAGCPTAAGSLLPAPRP 237
Query: 329 *SSSSWRILPWRQAALLYSWARERGRCSTRRTSAR*ARPCPLASRRSSTA*PAPRSCP 502
+SS+ AA + R S R S+R ARP P+ + R P PR P
Sbjct: 238 PASSASSPQAAAPAAPSATRLPRRTTPSAPRPSSRPARP-PIPAAR-----PPPRRTP 289
>ref|ZP_00023022.1| COG3170: Tfp pilus assembly protein FimV [Ralstonia metallidurans]
Length = 979
Score = 35.8 bits (81), Expect = 0.35
Identities = 30/90 (33%), Positives = 38/90 (41%)
Frame = -3
Query: 409 TPATFPGPAVQQSCLAPR*DSPG*AASRPAQTAQRRCTAPVPPRAAAEPLHALSWVATAT 230
TPA P PA +S AP + A+RPA A + A PR AA P+ A
Sbjct: 207 TPAPAPAPAPARSAPAPAPVAAAPEAARPAPAASTQPRAQQQPRPAAAPV--------AN 258
Query: 229 ALATRTGSFRFVSREQQAGHFAGSGMVQRD 140
A A GS+ V R AG + +D
Sbjct: 259 AGAAANGSYT-VQRGDTLSSIAGDAVQTQD 287
>ref|ZP_00051387.1| COG0532: Translation initiation factor 2 (IF-2; GTPase)
[Magnetospirillum magnetotacticum]
Length = 535
Score = 35.4 bits (80), Expect = 0.46
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = -3
Query: 484 RSGGTGSARSEWTGPSSSC*CAARGTPATFPGPAVQQSCLAPR*DSPG*AASRPAQTAQR 305
++G TGS+ +G ++ +A+ P PA S +P S G A +P T
Sbjct: 75 KTGTTGSSALPPSGNANPAAASAKPPEPGKPSPAASASAPSPASASGGSAPLKPGATG-- 132
Query: 304 RCTAPVPPRAAAEPLHA 254
++ VPP AA P HA
Sbjct: 133 --SSAVPPTAAGSPAHA 147
