KCC002971A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002971A_C01 KCC002971A_c01
acaataCACAATACACACGCAAGGCGCGGCGCCGCAGTGAGCTTAGAGGCCAAGCTCGCT
GAATGCTGACGGTGCCCGCGCGACTCACGGCTCTTCCGAATTAGTTTTTACTGATCAGGA
GGATGCCAGAAGGTAGTGGCATTACAGGGAAGCAGGACAGTGCTCGCGCAGTCGGCATCG
CCGTCGCGCGGGCCCGGCGAGCAGCCAGGCTTCGCATCTCCTGCCTCGGAGACTCCTAGC
TATCCCGTGCCTAACTCCTTCGCAACCTGGTCTCTCTCGCCCAGCTCGCCTGAGTGCGCG
ATCAACGAGGCGGAATGGAGAGAGTGCAACCCCCTCTTTAACCAGGAGGGCTTTGACCTA
TTTTCTTCATTCCTCAGAAAGCTCCGCGAGCTCCGCCTCAAGTCTGGAGGGCCTGAAGGG
CTGGGCCACATGCTTATGTGGATGTCGGGAATGGAGGCGCTACTGGACAGCCTGTTCATC
GGCGCCGACGTCGAACTCAACCAGCACGGATTGGACGAGGCCAAGCTGGACAACGCGATT
GCCCTCGTGCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002971A_C01 KCC002971A_c01
         (553 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC34305.1| unnamed protein product [Mus musculus]                 39  0.036
ref|NP_036054.1| arginine vasopressin receptor 1B; V3/V1b pituit...    39  0.036
ref|XP_344490.1| similar to neuregulin-3 [Rattus norvegicus]           39  0.036
ref|NP_032760.1| neuregulin 3 [Mus musculus] gi|9789755|sp|O3518...    39  0.047
ref|ZP_00095027.1| COG1530: Ribonucleases G and E [Novosphingobi...    39  0.061

>dbj|BAC34305.1| unnamed protein product [Mus musculus]
          Length = 304

 Score = 39.3 bits (90), Expect = 0.036
 Identities = 27/76 (35%), Positives = 36/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 212 SHLLPRRLLAIPCLTPSQPGLSRPARLSARSTRRN---GESATPSLTRRALTYFLHSSES 382
           SHLLPR L    C   S+P + R    S+ ++RR      +  PS  R +L   LH+   
Sbjct: 223 SHLLPRSLSHRACCRGSKPRVHRQLSNSSLASRRTTLLTHTCGPSTLRLSLNLSLHAKPK 282

Query: 383 SASSASSLEGLKGWAT 430
            A S   LE + G AT
Sbjct: 283 PAGSLKDLEQVDGEAT 298

>ref|NP_036054.1| arginine vasopressin receptor 1B; V3/V1b pituitary vasopressin
           receptor [Mus musculus] gi|10720349|sp|Q9WU02|V1BR_MOUSE
           Vasopressin V1b receptor (V1bR) (AVPR V1b) (Vasopressin
           V3 receptor) (AVPR V3) (Antidiuretic hormone receptor
           1b) gi|4691545|gb|AAD27957.1|AF098867_1 V3/V1b
           vasopressin receptor [Mus musculus]
           gi|6683454|dbj|BAA89205.1| V1b arginine vasopressin
           receptor [Mus musculus]
          Length = 421

 Score = 39.3 bits (90), Expect = 0.036
 Identities = 27/76 (35%), Positives = 36/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 212 SHLLPRRLLAIPCLTPSQPGLSRPARLSARSTRRN---GESATPSLTRRALTYFLHSSES 382
           SHLLPR L    C   S+P + R    S+ ++RR      +  PS  R +L   LH+   
Sbjct: 340 SHLLPRSLSHRACCRGSKPRVHRQLSNSSLASRRTTLLTHTCGPSTLRLSLNLSLHAKPK 399

Query: 383 SASSASSLEGLKGWAT 430
            A S   LE + G AT
Sbjct: 400 PAGSLKDLEQVDGEAT 415

>ref|XP_344490.1| similar to neuregulin-3 [Rattus norvegicus]
          Length = 281

 Score = 39.3 bits (90), Expect = 0.036
 Identities = 35/130 (26%), Positives = 51/130 (38%), Gaps = 15/130 (11%)
 Frame = +2

Query: 191 GPASSQASHLLPRRLLAIPCLTPSQPGLSRPARLSARSTRRNGESATPSLTRRALTYFLH 370
           G ASS+  + +  RL  I       PG   P R S RST     +A P++      +F  
Sbjct: 112 GAASSRTPNRISTRLTTITRAPTRFPGHRVPIRASPRSTTARNTAAPPTVLSTTSPFFSS 171

Query: 371 SSESS---ASSASSLEGLKGWATCLCGCREWRR----YWT--------ACSSAPTSNSTS 505
           S+  S      A S + +  W T       +       WT        A SS+  S+++S
Sbjct: 172 STPGSRPPMPGAPSTQAMPSWPTAAYATSSYLHDSTPSWTLSPFQDAAAASSSSPSSTSS 231

Query: 506 TDWTRPSWTT 535
           T  T P  +T
Sbjct: 232 TTTTTPETST 241

>ref|NP_032760.1| neuregulin 3 [Mus musculus] gi|9789755|sp|O35181|NRG3_MOUSE
           Pro-neuregulin-3 precursor (Pro-NRG3) [Contains:
           Neuregulin-3 (NRG-3)] gi|11360373|pir||T44447
           neuregulin-3 [imported] - mouse
           gi|2429164|gb|AAB70914.1| neuregulin-3 [Mus musculus]
          Length = 713

 Score = 38.9 bits (89), Expect = 0.047
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
 Frame = +2

Query: 191 GPASSQASHLLPRRLLAIPCLTPSQPGLSRPARLSARSTRRNGESATPSLTRRALTYFLH 370
           G ASS+  + +  RL  I       PG   P R S RST     +A P++      +F  
Sbjct: 144 GAASSRTPNRISTRLTTITRAPTRFPGHRVPIRASPRSTTARNTAAPPTVLSTTAPFFSS 203

Query: 371 SSESS---ASSASSLEGLKGWATCLCGCREWRR----YWT-------ACSSAPTSNSTST 508
           S+  S      A S + +  W T       +       WT       A +S+ + +STS+
Sbjct: 204 STPGSRPPMPGAPSTQAMPSWPTAAYATSSYLHDSTPSWTLSPFQDAAAASSSSPSSTSS 263

Query: 509 DWTRPSWTT 535
             T P  +T
Sbjct: 264 TTTTPETST 272

>ref|ZP_00095027.1| COG1530: Ribonucleases G and E [Novosphingobium aromaticivorans]
          Length = 482

 Score = 38.5 bits (88), Expect = 0.061
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
 Frame = +2

Query: 137 WHYREAGQCSRSRHRRRAGPASSQASHLLPRRLLAIPCLTPSQPGLSRPARLSARSTRRN 316
           W  RE   C R R R+   P +S ASH      +A     PS P ++R     AR  RR 
Sbjct: 34  WSAREPASCPRPRTRQ---PRAS-ASHCFRAAAIACSRPWPSSPPMAR----CARRCRRQ 85

Query: 317 GESATPSLTRRALTYFLHSSESSASSASSLEGLKGWAT---CLCGCREWRRYWTACSSAP 487
             +++ S TR++       +  +A+  + L  ++  A       GCR   R W+AC S  
Sbjct: 86  SCASSASPTRKS-----KPTSRAANGTARLVAMRSRAAPKVSAPGCRGAIRAWSACPSTK 140

Query: 488 TS------NSTSTDW 514
            +      +S S +W
Sbjct: 141 RAASFALPDSMSAEW 155



EST assemble image


clone accession position
1 LC077g01_r AV624435 1 512
2 MX229h11_r BP090845 7 282
3 LCL033g07_r AV627913 12 567
4 LCL051b10_r AV629065 13 390
5 LC065c10_r AV623537 55 510




Chlamydomonas reinhardtii
Kazusa DNA Research Institute