Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002970A_C01 KCC002970A_c01
(545 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_784117.1| extracellular protein [Lactobacillus plantarum ... 40 0.020
ref|NP_785666.1| extracellular protein, gamma-D-glutamate-meso-d... 39 0.045
ref|ZP_00028159.1| COG0772: Bacterial cell division membrane pro... 39 0.059
gb|AAH36187.1| SRRM1 protein [Homo sapiens] 38 0.077
ref|NP_786644.1| extracellular protein, gamma-D-glutamate-meso-d... 37 0.13
>ref|NP_784117.1| extracellular protein [Lactobacillus plantarum WCFS1]
gi|28270056|emb|CAD62956.1| extracellular protein
[Lactobacillus plantarum WCFS1]
Length = 267
Score = 40.0 bits (92), Expect = 0.020
Identities = 27/86 (31%), Positives = 50/86 (57%)
Frame = +3
Query: 222 LQVQLRLQSSTQASSRRGAPVSVRAQAAPRRAPDASTGTATSSRKNSRTVANFQNADAAT 401
L+V ++T +++ AP S +QA A A++ +ATS+ +S++VA+ + AAT
Sbjct: 69 LEVNGTTTTTTTSTATSAAPQSATSQATSSAASTATSASATSA--SSQSVASQATSSAAT 126
Query: 402 LTLPSQVQLAESSSAAKTKATTLSWA 479
+ SQ + ++SAA + ++T S A
Sbjct: 127 ASAASQATSSVATSAASSASSTQSAA 152
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +3
Query: 246 SSTQASSRRGAPVSVRAQAAPRRAPDASTGTATSSRKNSRTVANFQNADAATLTLPSQVQ 425
S+T ASS+ A + + A A A++ ATS+ ++ + + + +++ SQ
Sbjct: 107 SATSASSQSVASQATSSAATASAASQATSSVATSAASSASSTQSAASQASSSAATTSQAS 166
Query: 426 LAESSSAAKTKATTLS 473
+ +SSAA + A+T S
Sbjct: 167 SSATSSAASSTASTTS 182
>ref|NP_785666.1| extracellular protein, gamma-D-glutamate-meso-diaminopimelate
muropeptidase (putative) [Lactobacillus plantarum WCFS1]
gi|28271611|emb|CAD64517.1| extracellular protein,
gamma-D-glutamate-meso-diaminopimelate muropeptidase
(putative) [Lactobacillus plantarum WCFS1]
Length = 496
Score = 38.9 bits (89), Expect = 0.045
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +3
Query: 177 AKAAAAVTSHTMQQSLQVQLRLQSSTQASSRRGAPVSVRAQAAPRRAPDASTGTATSSRK 356
A +A++ ++ T+ S + SST +S APV A +A A +AS+ TATS K
Sbjct: 213 ANSASSTSTSTISSSTG---SVASSTATTSN--APVKAVATSAAVSASNASSSTATSQSK 267
Query: 357 N---SRTVANFQNADAATLTLPSQVQLAESSSAAKTKATT 467
+ S +V + ++ AA+ T SQ A ++SA T +TT
Sbjct: 268 SVAASASVTSSASSSAASSTTTSQ-STASTASATSTSSTT 306
Score = 35.0 bits (79), Expect = 0.65
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +3
Query: 177 AKAAAAVTSHTMQQSLQVQLRLQSSTQASSRRGAPVSV--RAQAAPRRAPDASTGTATSS 350
A +AA+ TS T + + V SST ASS SV AA + A A++ ++TS+
Sbjct: 162 ATSAASTTSTTAKATTAVSASSTSSTSASSVSSVSASVVSSTSAASQDAVSANSASSTST 221
Query: 351 RKNSRTVANFQNADAATLTLPSQV----QLAESSSAAKTKATTLS 473
S + + ++ A T P + +S+A+ + AT+ S
Sbjct: 222 STISSSTGSVASSTATTSNAPVKAVATSAAVSASNASSSTATSQS 266
Score = 31.6 bits (70), Expect = 7.2
Identities = 25/97 (25%), Positives = 42/97 (42%)
Frame = +3
Query: 177 AKAAAAVTSHTMQQSLQVQLRLQSSTQASSRRGAPVSVRAQAAPRRAPDASTGTATSSRK 356
A A +A S + S + +S ++S + S A + AST +ATS+
Sbjct: 245 AVATSAAVSASNASSSTATSQSKSVAASASVTSSASSSAASSTTTSQSTASTASATSTSS 304
Query: 357 NSRTVANFQNADAATLTLPSQVQLAESSSAAKTKATT 467
+ T Q + A + ++SSSAA + +TT
Sbjct: 305 TTATSTASQASSTAASAASTTSTASQSSSAATSSSTT 341
>ref|ZP_00028159.1| COG0772: Bacterial cell division membrane protein [Burkholderia
fungorum]
Length = 545
Score = 38.5 bits (88), Expect = 0.059
Identities = 46/152 (30%), Positives = 62/152 (40%), Gaps = 4/152 (2%)
Frame = +1
Query: 55 CVTTIQFSRATTTTITIP*LQGLANSKELPSKHVSGLNSRWRKQQQL*RRTRCSSLSKFS 234
C TT +R P Q K P + S + R R++ R R S +F
Sbjct: 12 CSTTTSSARTNRALRRRPSRQRHRQPKTRP-RPKSAAHRRHRRRCSRSRSLRASLPCRFP 70
Query: 235 CGCRAPHRRLLGAALPSAYARRLPRGVLRTRRPVP---PLPRARTLALSPTSKM-PMRRL 402
R P RR LP AR PR +L RRP P PLP+ ++P ++ P+R
Sbjct: 71 VRLR-PQRRPPLRRLPRRRARHRPRHLLPRRRPWPPPRPLPQRIRRRVNPAPRINPVRP- 128
Query: 403 *LYLRKFSWPSRRQPPRPRPQRSVGRARASSS 498
SRR+ PR R +V R R +S
Sbjct: 129 ---------ASRRRAPRHRRAMTVFRPRRHAS 151
>gb|AAH36187.1| SRRM1 protein [Homo sapiens]
Length = 904
Score = 38.1 bits (87), Expect = 0.077
Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 7/164 (4%)
Frame = +1
Query: 64 TIQFSRATTTTITIP*LQGLANSKELPSKHVSGLNSRWRKQQQL*RRTRCSSLSKFSCGC 243
++Q + +T+ + +P + + KE PS + + +++ Q R+R S S+
Sbjct: 234 SVQEATSTSDILKVPKPEPIPEPKE-PSPEKNSKKEKEKEKTQ--PRSRSRSKSRSRTRS 290
Query: 244 RAP-HRRLLGAALPSAYARRLPRGVLRTRRPVP---PLPRARTLALSPTSKMPMRRL*LY 411
R+P H R P R R RRP P P PR RT
Sbjct: 291 RSPSHTR------PRRRHRSRSRSYSPRRRPSPRRRPSPRRRT----------------- 327
Query: 412 LRKFSWPSRRQPPRPRPQRS---VGRARASSSFGSWARSSSSPS 534
P RR PP PR +RS V R R SS+ S + SSSS S
Sbjct: 328 ------PPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSS 365
>ref|NP_786644.1| extracellular protein, gamma-D-glutamate-meso-diaminopimelate
muropeptidase (putative) [Lactobacillus plantarum WCFS1]
gi|28272593|emb|CAD65521.1| extracellular protein,
gamma-D-glutamate-meso-diaminopimelate muropeptidase
(putative) [Lactobacillus plantarum WCFS1]
Length = 370
Score = 37.4 bits (85), Expect = 0.13
Identities = 30/97 (30%), Positives = 48/97 (48%)
Frame = +3
Query: 177 AKAAAAVTSHTMQQSLQVQLRLQSSTQASSRRGAPVSVRAQAAPRRAPDASTGTATSSRK 356
AK+ +A TS T Q+ S+T ASS A S A AS + TSS
Sbjct: 109 AKSTSAATS-TSSQATSAAATSSSTTSASSTSQAVSSSSVAAQSSSTSTASASSVTSSAS 167
Query: 357 NSRTVANFQNADAATLTLPSQVQLAESSSAAKTKATT 467
S +VA+ ++ A T + SQ ++SS++ ++++T
Sbjct: 168 TS-SVASQASSSAVTSSATSQSSASQSSASQASQSST 203
Score = 32.0 bits (71), Expect = 5.5
Identities = 25/101 (24%), Positives = 46/101 (44%)
Frame = +3
Query: 177 AKAAAAVTSHTMQQSLQVQLRLQSSTQASSRRGAPVSVRAQAAPRRAPDASTGTATSSRK 356
A ++A +S T Q S QSS +S+ PV+ A+T T++ +
Sbjct: 175 ASSSAVTSSATSQSSAS-----QSSASQASQSSTPVASSTSTTATSTQSAATSTSSQA-- 227
Query: 357 NSRTVANFQNADAATLTLPSQVQLAESSSAAKTKATTLSWA 479
S T +N ++T T + A +S++ T ++T S++
Sbjct: 228 -SSTASN--TTSSSTTTATATAYSASASTSTSTTSSTASYS 265
