KCC002969A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002969A_C01 KCC002969A_c01
gagactaataacaactcgtgcacaaagttcatcacgccaaaTTACAAGGACCCTTAGGCA
GCGCACTACTGCCATTTGTCGAACTTGGACCCACAAACAACTGGCTTGATAGCGCAGACA
TAACCTTGAAGGCATCAATAGCAGAAAGAATCAAGCCATGGACGTCGCGGAGCACGAGCT
GCAGGGGCTCTACACCTGGGTCGACGAAATTCCCTTGGTCGCGTCCGAAGCGGAACATTG
CTCGCGACTTTAGCGATGGAGTGCTCATGGCGGAGGTCGTGCACCACTTCTACCCGAAGC
TGGTGGAGCTGCACAACTACAGCTCTGCTAACGGCCTGCAACAAAAGATGTACAACTGGA
ATACGCTGAACGCCAAGGTGTTTAAGCGGTTAGGCTTCATGGCCACGAAGCAGGACTGCG
AGGCCTGTTGCAATTGCAAACCGGGGGCAGTGGAGCGGGTGCTGAAGCTCATCAAGGTCA
AAATCGCCAAGTACAACGAGGAGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002969A_C01 KCC002969A_c01
         (506 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA17295.1| Homo sapiens dJ1009E24.4-related [Plasmodium yoel...   110  8e-24
ref|NP_056232.1| chromosome 20 open reading frame 28 [Homo sapie...   102  5e-23
gb|AAH55652.1| Unknown (protein for MGC:66426) [Danio rerio]          101  6e-23
gb|EAA36800.1| GLP_563_8260_7526 [Giardia lamblia ATCC 50803]         102  3e-22
ref|NP_704833.1| hypothetical protein, conserved [Plasmodium fal...   104  6e-22

>gb|EAA17295.1| Homo sapiens dJ1009E24.4-related [Plasmodium yoelii yoelii]
          Length = 190

 Score =  110 bits (276), Expect = 8e-24
 Identities = 56/98 (57%), Positives = 66/98 (67%)
 Frame = +3

Query: 210 FPWSRPKRNIARDFSDGVLMAEVVHHFYPKLVELHNYSSANGLQQKMYNWNTLNAKVFKR 389
           F  SR  +NI RDFSDGVLMAE+V+   PK VE+HNYS AN + QK YNWNTLN KVFKR
Sbjct: 28  FTLSRKIKNINRDFSDGVLMAELVNICLPKFVEIHNYSKANSINQKTYNWNTLNEKVFKR 87

Query: 390 LGFMATKQDCEACCNCKPGAVERVLKLIKVKIAKYNEE 503
           L F   K++ E   NCK   VE+VL   K ++ KY  E
Sbjct: 88  LSFKIDKKNVEEIVNCKYMGVEKVLITFKDQLQKYKSE 125

>ref|NP_056232.1| chromosome 20 open reading frame 28 [Homo sapiens]
           gi|23396538|sp|Q9Y4P9|CT28_HUMAN Protein C20orf28
           gi|7512610|pir||T12538 hypothetical protein
           DKFZp434I114.1 - human gi|5262611|emb|CAB45745.1|
           hypothetical protein [Homo sapiens]
           gi|11493368|emb|CAC17546.1| dJ1009E24.4 (novel protein)
           [Homo sapiens] gi|18490391|gb|AAH22476.1| Chromosome 20
           open reading frame 28 [Homo sapiens]
          Length = 162

 Score =  102 bits (254), Expect(2) = 5e-23
 Identities = 48/84 (57%), Positives = 57/84 (67%)
 Frame = +3

Query: 213 PWSRPKRNIARDFSDGVLMAEVVHHFYPKLVELHNYSSANGLQQKMYNWNTLNAKVFKRL 392
           P SRPKRN++RDFSDGVL+AEV+  ++PK+VE+HNY  AN LQQK+ NW  LN KV KRL
Sbjct: 21  PLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRL 80

Query: 393 GFMATKQDCEACCNCKPGAVERVL 464
            F            C PG VE VL
Sbjct: 81  NFSVPDDVMRKIAQCAPGVVELVL 104

 Score = 26.6 bits (57), Expect(2) = 5e-23
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 155 AMDVAEHELQGLYTWVDEIPL 217
           A  V E  L  LY WVD IPL
Sbjct: 2   ASSVDEEALHQLYLWVDNIPL 22

>gb|AAH55652.1| Unknown (protein for MGC:66426) [Danio rerio]
          Length = 231

 Score =  101 bits (251), Expect(2) = 6e-23
 Identities = 51/98 (52%), Positives = 62/98 (63%)
 Frame = +3

Query: 207 KFPWSRPKRNIARDFSDGVLMAEVVHHFYPKLVELHNYSSANGLQQKMYNWNTLNAKVFK 386
           K P SRPKRNI RDFSDGV+ AEVV HF+PKLVE HNY+ A+  QQK  NW TLN KVF 
Sbjct: 21  KIPLSRPKRNITRDFSDGVMAAEVVKHFFPKLVESHNYTPAHSTQQKQSNWITLNRKVFS 80

Query: 387 RLGFMATKQDCEACCNCKPGAVERVLKLIKVKIAKYNE 500
           +L F   +   +      PG +E  L  ++ KI +  E
Sbjct: 81  KLNFHIPEDTVKKIVVSTPGYIEPALCSLREKIEEKKE 118

 Score = 27.3 bits (59), Expect(2) = 6e-23
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +2

Query: 170 EHELQGLYTWVDEIPL 217
           E  LQ LY W+D+IPL
Sbjct: 9   EETLQDLYAWIDKIPL 24

>gb|EAA36800.1| GLP_563_8260_7526 [Giardia lamblia ATCC 50803]
          Length = 244

 Score =  102 bits (253), Expect(2) = 3e-22
 Identities = 50/101 (49%), Positives = 67/101 (65%), Gaps = 3/101 (2%)
 Frame = +3

Query: 213 PWSRPKRNIARDFSDGVLMAEVVHHFYPKLVELHNYSSANGLQQKMYNWNTLNAKVFKRL 392
           P SR K  I+RDF+DGVL+AEV+HHF PKLVELHNY S    + K  NW TL  KV KRL
Sbjct: 22  PLSRSKGYISRDFADGVLLAEVIHHFLPKLVELHNYQSTTNSEAKRKNWETLQQKVLKRL 81

Query: 393 GFMATKQDCEACCNCKPGAVERVLKLIK---VKIAKYNEEH 506
               +  + +A  + KPGA+ERVL  ++   ++++  +EEH
Sbjct: 82  QLKLSADEIDALISAKPGAIERVLIRVRSAIMRVSARSEEH 122

 Score = 24.3 bits (51), Expect(2) = 3e-22
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 161 DVAEHELQGLYTWVDEIPLVASE 229
           D A HE+   Y WVD IPL  S+
Sbjct: 8   DEARHEI---YLWVDGIPLSRSK 27

>ref|NP_704833.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
           gi|23505195|emb|CAD51976.1| hypothetical protein,
           conserved [Plasmodium falciparum 3D7]
          Length = 216

 Score =  104 bits (260), Expect = 6e-22
 Identities = 53/98 (54%), Positives = 65/98 (66%)
 Frame = +3

Query: 210 FPWSRPKRNIARDFSDGVLMAEVVHHFYPKLVELHNYSSANGLQQKMYNWNTLNAKVFKR 389
           F  SR  +N+ RDFSDGVLMAE+V+   P+ VELHNYS AN + QK YNWNTLN KVFKR
Sbjct: 28  FTLSRKIKNVNRDFSDGVLMAELVNSCLPRFVELHNYSKANSINQKRYNWNTLNEKVFKR 87

Query: 390 LGFMATKQDCEACCNCKPGAVERVLKLIKVKIAKYNEE 503
           L F   K++ E   N K   VE+VL   K ++ K+  E
Sbjct: 88  LDFKIDKKNVEEIVNSKCLGVEKVLITFKKQLFKFQNE 125



EST assemble image


clone accession position
1 LC064f12_r AV623497 1 506
2 MX012f01_r BP086601 42 397




Chlamydomonas reinhardtii
Kazusa DNA Research Institute