KCC002968A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002968A_C01 KCC002968A_c01
acggtgatttcttcaccgccgtgctgaaggcgcggccggagatggtcaacgactgggctg
ccaagctgtggtcgcgctttTTCTGCCTGTCGGTGTACATCACCATGTACCTGAACGACC
ACCAGCGCGAGGCCTTCTACAGCTCTCTGGGCCTGAACACCACCCAGTTCAACCAGCACG
TGATCATCGAGACCAACAAGTCTACTGAGCGTATCTTCCCCGCTGTGCCGGATGTGGAGA
ACCCCGAGTTCTTCCGCCGCATGGACCTGCTGGTCAAGTACAACGCCCAGCTGGTGAACA
TCGGCAGCATGAACCTGCCCAGCCCCATCAAGGCGATCATGAAGGCGCCCATTCTGGAGC
GCATGGTCGCTGAGGTGTTCCAGGTGTTCATCATGACCCCTAAGGAGTCGGGCTCGTACG
ACCTGGATGCCAACAAGACCGCTCTGGTCTACTAAGCGGCTGGCGTACTAGCCTGCGGGA
GCTGGGCGGCTGGATGTCGGAGTTTTGAGAGTGCTTGGGAGCTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002968A_C01 KCC002968A_c01
         (525 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK32149.1|AF337037_1 copper target homolog 1 protein [Chlamy...   302  2e-81
gb|AAL14712.2|AF426027_1 copper target homolog 1 protein [Chlamy...   300  6e-81
gb|AAO89566.1| basic leucine zipper transcription factor CAT103 ...   180  1e-44
gb|AAP83876.1| putative fatty acid desaturase BNZIP [Brassica na...   175  4e-43
gb|AAP83873.1| putative fatty acid desaturase SOZIP [Spinacia ol...   173  1e-42

>gb|AAK32149.1|AF337037_1 copper target homolog 1 protein [Chlamydomonas reinhardtii]
           gi|13604231|gb|AAK32150.1|AF337038_1 copper target
           homolog 1 protein [Chlamydomonas reinhardtii]
          Length = 407

 Score =  302 bits (774), Expect = 2e-81
 Identities = 149/150 (99%), Positives = 150/150 (99%)
 Frame = +3

Query: 3   GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQREAFYSSLGLNTTQFNQHV 182
           GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQR+AFYSSLGLNTTQFNQHV
Sbjct: 258 GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQRDAFYSSLGLNTTQFNQHV 317

Query: 183 IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVNIGSMNLPSPIKAIMKAPILER 362
           IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVNIGSMNLPSPIKAIMKAPILER
Sbjct: 318 IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVNIGSMNLPSPIKAIMKAPILER 377

Query: 363 MVAEVFQVFIMTPKESGSYDLDANKTALVY 452
           MVAEVFQVFIMTPKESGSYDLDANKTALVY
Sbjct: 378 MVAEVFQVFIMTPKESGSYDLDANKTALVY 407

>gb|AAL14712.2|AF426027_1 copper target homolog 1 protein [Chlamydomonas reinhardtii]
          Length = 407

 Score =  300 bits (769), Expect = 6e-81
 Identities = 148/150 (98%), Positives = 150/150 (99%)
 Frame = +3

Query: 3   GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQREAFYSSLGLNTTQFNQHV 182
           GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQR+AFYSSLGLNTTQFNQHV
Sbjct: 258 GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQRDAFYSSLGLNTTQFNQHV 317

Query: 183 IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVNIGSMNLPSPIKAIMKAPILER 362
           IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLV+IGSMNLPSPIKAIMKAPILER
Sbjct: 318 IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVDIGSMNLPSPIKAIMKAPILER 377

Query: 363 MVAEVFQVFIMTPKESGSYDLDANKTALVY 452
           MVAEVFQVFIMTPKESGSYDLDANKTALVY
Sbjct: 378 MVAEVFQVFIMTPKESGSYDLDANKTALVY 407

>gb|AAO89566.1| basic leucine zipper transcription factor CAT103 [Cucumis sativus]
          Length = 332

 Score =  180 bits (456), Expect = 1e-44
 Identities = 81/140 (57%), Positives = 109/140 (77%)
 Frame = +3

Query: 3   GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQREAFYSSLGLNTTQFNQHV 182
           GDFF+A+LKA+P+ +NDW AKLWSRFFCLSVY+TMYLND QR AFY  +GLNT +F+ HV
Sbjct: 187 GDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHV 246

Query: 183 IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVNIGSMNLPSPIKAIMKAPILER 362
           IIETN++T RIFPAVPDVENPEF R++D +V+ N +L+ +G  N    +K++ + P+   
Sbjct: 247 IIETNRTTARIFPAVPDVENPEFKRKLDRMVEINEKLIAVGETNDLPLVKSLKRIPLAAA 306

Query: 363 MVAEVFQVFIMTPKESGSYD 422
           +V+E+   ++M P ESGS D
Sbjct: 307 LVSEILAAYLMPPIESGSVD 326

>gb|AAP83876.1| putative fatty acid desaturase BNZIP [Brassica napus]
          Length = 308

 Score =  175 bits (443), Expect = 4e-43
 Identities = 79/142 (55%), Positives = 109/142 (76%)
 Frame = +3

Query: 3   GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQREAFYSSLGLNTTQFNQHV 182
           GDFF+A++KA+P+ +NDW AKLWSRFFCLSVY+TMYLND QR  FY  +GLNT +F+ HV
Sbjct: 156 GDFFSALMKAQPQFLNDWQAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHV 215

Query: 183 IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVNIGSMNLPSPIKAIMKAPILER 362
           IIETN++T RIFPAV DVENPEF R++D +V  N +L+ +G  + PS +K + + P++  
Sbjct: 216 IIETNRTTARIFPAVLDVENPEFKRKLDRMVVINEKLMAVGQTDDPSFVKNLKRIPLIAG 275

Query: 363 MVAEVFQVFIMTPKESGSYDLD 428
           +V+E+   ++M P ESGS D +
Sbjct: 276 LVSEILAAYLMPPVESGSTDFE 297

>gb|AAP83873.1| putative fatty acid desaturase SOZIP [Spinacia oleracea]
          Length = 301

 Score =  173 bits (439), Expect = 1e-42
 Identities = 79/140 (56%), Positives = 107/140 (76%)
 Frame = +3

Query: 3   GDFFTAVLKARPEMVNDWAAKLWSRFFCLSVYITMYLNDHQREAFYSSLGLNTTQFNQHV 182
           GDFF+A++KA+P+ +NDW AKLWSRFFCLSVY+TMYLND QR  FY  +GLNT +F+ HV
Sbjct: 156 GDFFSALMKAQPQFLNDWQAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHV 215

Query: 183 IIETNKSTERIFPAVPDVENPEFFRRMDLLVKYNAQLVNIGSMNLPSPIKAIMKAPILER 362
           IIETN++T RIFPAV DVENPEF R++D +V    +L+ +G  + PS +K + K P++  
Sbjct: 216 IIETNRTTARIFPAVLDVENPEFKRKLDRMVVIYEKLMAVGKTDDPSFVKNLKKVPLIAG 275

Query: 363 MVAEVFQVFIMTPKESGSYD 422
           +V+E+   ++M P ESGS D
Sbjct: 276 LVSEILAAYLMPPAESGSVD 295



EST assemble image


clone accession position
1 LC064c01_r AV623468 1 456
2 MXL100g01_r BP098880 158 525




Chlamydomonas reinhardtii
Kazusa DNA Research Institute