Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002965A_C01 KCC002965A_c01
(540 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE05353.1| OSJNBa0065J03.12 [Oryza sativa (japonica cultiva... 38 0.075
gb|AAK27697.1|AF348409_1 ORF1 [TT virus] 38 0.098
ref|NP_770546.1| biopolymer transport protein [Bradyrhizobium ja... 38 0.098
ref|NP_827199.1| putative dihydrolipoamide S-succinyltransferase... 37 0.17
gb|AAF18101.1|AF204400_1 FrgA [Myxococcus xanthus] 37 0.22
>emb|CAE05353.1| OSJNBa0065J03.12 [Oryza sativa (japonica cultivar-group)]
Length = 759
Score = 38.1 bits (87), Expect = 0.075
Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +1
Query: 340 LAAAAPPPPIGPG*ETALPVPVRSACASPCVP*RCSPSSSSSRSSWVAAALAA------P 501
LA PPPP P LP RS+C+S R SPSS SS SS V + L + P
Sbjct: 203 LAPRNPPPPAAPAAPPVLPHSCRSSCSS-----RASPSSCSSVSSRVRSLLRSSISRQGP 257
Query: 502 AWTLARAAAC 531
+ R AC
Sbjct: 258 SQWQRRLVAC 267
>gb|AAK27697.1|AF348409_1 ORF1 [TT virus]
Length = 740
Score = 37.7 bits (86), Expect = 0.098
Identities = 22/48 (45%), Positives = 24/48 (49%)
Frame = -1
Query: 438 SWHAG*CARRPNRHR*CRLLARTDRRRWRGRR*QMPRRPPTRRLTRPR 295
+W RRPNR R RRRWR R + PRRP RR RPR
Sbjct: 2 AWRWWWARRRPNR--------RWTRRRWRRLRTRRPRRPVRRRRRRPR 41
>ref|NP_770546.1| biopolymer transport protein [Bradyrhizobium japonicum]
gi|27352167|dbj|BAC49171.1| biopolymer transport protein
[Bradyrhizobium japonicum USDA 110]
Length = 326
Score = 37.7 bits (86), Expect = 0.098
Identities = 23/66 (34%), Positives = 34/66 (50%)
Frame = +1
Query: 340 LAAAAPPPPIGPG*ETALPVPVRSACASPCVP*RCSPSSSSSRSSWVAAALAAPAWTLAR 519
++A PP P TA P P+ A+P P P+ ++S ++ AAA A+PA +A
Sbjct: 25 VSAQTQTPPAAPAQSTARPAPISPVPAAPSTPAPAVPAPAASTATAPAAATASPA-AIAP 83
Query: 520 AAACSD 537
A A D
Sbjct: 84 ATAKPD 89
>ref|NP_827199.1| putative dihydrolipoamide S-succinyltransferase [Streptomyces
avermitilis MA-4680] gi|29609685|dbj|BAC73734.1|
putative dihydrolipoamide S-succinyltransferase
[Streptomyces avermitilis MA-4680]
Length = 607
Score = 37.0 bits (84), Expect = 0.17
Identities = 28/83 (33%), Positives = 40/83 (47%)
Frame = +1
Query: 286 AAVARAG*PPRGRPSWHLLAAAAPPPPIGPG*ETALPVPVRSACASPCVP*RCSPSSSSS 465
AA A+A P P+ A AAP P P A P P ++A A+P P + +P+ ++
Sbjct: 219 AAPAQAAPAPAAAPAAPAPAPAAPAPA-APAPAPAAPAPAQAAPAAPAAPAQAAPAPAAP 277
Query: 466 RSSWVAAALAAPAWTLARAAACS 534
++ AA AP A AA S
Sbjct: 278 QAP--AAPAPAPVTPAAAPAATS 298
>gb|AAF18101.1|AF204400_1 FrgA [Myxococcus xanthus]
Length = 883
Score = 36.6 bits (83), Expect = 0.22
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +1
Query: 313 PRGRPSWHLLAAAAPPPP--IGPG*ETALPVPVRSACASPCVP*RCSPSSSSSRSSWVAA 486
P P+ H APPP P E A V A P R P+S SR A
Sbjct: 305 PTAPPTLHFATPVAPPPKPAAAPRGEPAFLVFPNPGAAQNAQPPRPKPASLESRPPAPPA 364
Query: 487 ALAAPAWTLARAAA 528
+ P WTLA+A A
Sbjct: 365 SQDVPDWTLAQARA 378
