KCC002958A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002958A_C01 KCC002958A_c01
tccctcatacaatttttAGTTACTCACTGGTTCAAAATGCTCAGCCTTCACCGTGCGCGA
AGTGTTTCGTCATCTCGGCCGCACGGTCGCGCACAGCTGTCCCGGCGGACAGTCATCGTT
TCTGCCAGCCACTCGGAACAAAAGCGGGTGATCGCCATATGTGGCTACGGACCTGGTATC
TCCAACTCGGTCGCGCACCTTTGGGCCTCGCATGGCTTTCAAGTAGCGCTTCTCAGCAGG
ACGCAGGCGCGTCTCGACCACGGCGCAAAAGAGATCAGCGCCAAGGGCGGACATGCCAAA
GGCTATGCGGTTGACCTGGCCAAGCCCGAGGACGTCAxxxxxxxxxxxxxxxAGGTGTCA
CAGGAGCTGGGCACCGTCACTGTGCTGTTCTGGAACCCCGCCAGCCACGCATGGGGCGAC
GTGCTGAGTCTGGACATTGACACCATCGAGCACAACCTGCAGCACCAGGTCACAGGCCTG
CTGGCGGCGGTGCAGCAGGTGGTTCCAGACATGGCCTCGCGCCCCGGCTCCGCCATCCTG
GTGACGGGCGGCGGCCTATCGCTGGCGGCTGAGAACCGCGCACTGGCCAAGGCCGCCAAC
GCCATGGGCGGCGTGGCGGTGGCGGCAGGCAAGGCGGCACAGCGGGCGCTAGTGCACAGC
CTGnCGGAGGGCCTGGCGCCCAAGGGCATCCGGGTGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002958A_C01 KCC002958A_c01
         (698 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_823521.1| putative oxidoreductase [Streptomyces avermitil...    80  2e-14
pir||S72165 hypothetical protein 4 - Rhizobium leguminosarum bv....    76  6e-13
ref|ZP_00108561.1| COG1028: Dehydrogenases with different specif...    74  3e-12
ref|NP_786346.1| short-chain dehydrogenase/oxidoreductase [Lacto...    70  3e-11
ref|ZP_00094999.1| COG1028: Dehydrogenases with different specif...    70  4e-11

>ref|NP_823521.1| putative oxidoreductase [Streptomyces avermitilis MA-4680]
           gi|29605992|dbj|BAC70056.1| putative oxidoreductase
           [Streptomyces avermitilis MA-4680]
          Length = 222

 Score = 80.5 bits (197), Expect = 2e-14
 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
 Frame = +1

Query: 151 IAICGYGPGISNSVAHLWASHGFQVALLSRTQARLDHGAKEISAKGGHAKGYAVDLAKPE 330
           IAI G GPG+  +VA  +   GF VAL+SR + R+D  A E++ +G  A+G+A D+  P+
Sbjct: 4   IAIVGAGPGLGAAVARRFGREGFDVALVSRDRGRVDALAAELAEEGVTARGFAADVRDPK 63

Query: 331 DVXXXXXXVSQELGTVTVLFWNPASHA--WGDVLSLDIDTIEHNLQHQVTGLLAAVQQVV 504
            +       +  LG + VL ++P         VL      +   ++  + G +AAVQQ V
Sbjct: 64  ALTAALDAATATLGPIEVLQYSPVPQREFMRPVLETTPADLVGPIEFSLYGPVAAVQQAV 123

Query: 505 PDM-ASRPGSAILVTGGGLSLAAENRALAKAANAMGGVAVAAGKAAQRALVHSLXEGLAP 681
           P M A   G+ + V GG   +   +RA         G +VA   AA+ A  H L + LA 
Sbjct: 124 PGMRALGRGTVLFVNGGTAVVPHPDRA---------GTSVAF--AAESAYGHLLHDTLAG 172

Query: 682 KGIRV 696
            GI V
Sbjct: 173 DGIHV 177

>pir||S72165 hypothetical protein 4 - Rhizobium leguminosarum bv. viciae plasmid
           gi|780658|gb|AAC44313.1| putative alcohol dehydrogenase
           [Rhizobium leguminosarum bv. viciae]
          Length = 229

 Score = 75.9 bits (185), Expect = 6e-13
 Identities = 51/181 (28%), Positives = 82/181 (45%)
 Frame = +1

Query: 148 VIAICGYGPGISNSVAHLWASHGFQVALLSRTQARLDHGAKEISAKGGHAKGYAVDLAKP 327
           ++ I G GPG  +++   +   G+QVA+L+RT  RL     ++ ++  +A     D+A P
Sbjct: 4   LVIITGVGPGTGSAMVRRFHDGGYQVAMLARTAERL----SDLESELPNAFAVPCDVADP 59

Query: 328 EDVXXXXXXVSQELGTVTVLFWNPASHAWGDVLSLDIDTIEHNLQHQVTGLLAAVQQVVP 507
             +      + Q  G   V+  N    A+G+ L ++ + ++ N Q  V  LL   +   P
Sbjct: 60  AALAAALETIEQRAGAPKVVIHNAVGGAFGNFLDIEPEVLQQNFQINVMALLQLARWAAP 119

Query: 508 DMASRPGSAILVTGGGLSLAAENRALAKAANAMGGVAVAAGKAAQRALVHSLXEGLAPKG 687
            M    G A+LVTG             KAA A      A  KAAQR L   +   + P+G
Sbjct: 120 RMEVAGGGALLVTG---------NTAGKAAFA----GFAPSKAAQRVLTECIAREMGPRG 166

Query: 688 I 690
           +
Sbjct: 167 V 167

>ref|ZP_00108561.1| COG1028: Dehydrogenases with different specificities (related to
           short-chain alcohol dehydrogenases) [Nostoc punctiforme]
          Length = 229

 Score = 73.6 bits (179), Expect = 3e-12
 Identities = 53/180 (29%), Positives = 77/180 (42%)
 Frame = +1

Query: 157 ICGYGPGISNSVAHLWASHGFQVALLSRTQARLDHGAKEISAKGGHAKGYAVDLAKPEDV 336
           I G G G+S S+A L+A  GF VAL +R   +L    +EI A       +A D++KP +V
Sbjct: 7   IVGAGSGLSASLARLFAKEGFTVALAARQIEKLTQLTREIDAVS-----FAADVSKPNEV 61

Query: 337 XXXXXXVSQELGTVTVLFWNPASHAWGDVLSLDIDTIEHNLQHQVTGLLAAVQQVVPDMA 516
                 + +++G+  V+ +NP+    G ++ LD   +   L     G     Q       
Sbjct: 62  EQLFIDIDRKIGSPNVVIYNPSFRVRGPLIDLDPGEVAKTLDVTAYGGFLVAQAATKRFL 121

Query: 517 SRPGSAILVTGGGLSLAAENRALAKAANAMGGVAVAAGKAAQRALVHSLXEGLAPKGIRV 696
              G AI  TG   S+     +             A GK A R L  S+   LAPK I V
Sbjct: 122 QLGGGAIFFTGASASVKGYPLS----------APFAMGKFALRGLAQSIARELAPKNIHV 171

>ref|NP_786346.1| short-chain dehydrogenase/oxidoreductase [Lactobacillus plantarum
           WCFS1] gi|28272293|emb|CAD65206.1| short-chain
           dehydrogenase/oxidoreductase [Lactobacillus plantarum
           WCFS1]
          Length = 247

 Score = 70.1 bits (170), Expect = 3e-11
 Identities = 43/138 (31%), Positives = 65/138 (46%)
 Frame = +1

Query: 133 SEQKRVIAICGYGPGISNSVAHLWASHGFQVALLSRTQARLDHGAKEISAKGGHAKGYAV 312
           S + +VI I G   GI  + A L ASHG +V L +R + RL   A +I  +GG A     
Sbjct: 2   SVKNKVIVITGASSGIGEASAKLLASHGAKVVLGARREQRLQKLANKIQQQGGQATYRVT 61

Query: 313 DLAKPEDVXXXXXXVSQELGTVTVLFWNPASHAWGDVLSLDIDTIEHNLQHQVTGLLAAV 492
           D+ KPED+        +E G + V+F N        + +L  D     +   + G+L  V
Sbjct: 62  DVTKPEDLTALVALAKREFGGIDVIFNNAGIMPTSPISALKTDEWNAMIDVNLKGVLNGV 121

Query: 493 QQVVPDMASRPGSAILVT 546
             V+PD  ++    I+ T
Sbjct: 122 AAVMPDFTNQKYGQIITT 139

>ref|ZP_00094999.1| COG1028: Dehydrogenases with different specificities (related to
           short-chain alcohol dehydrogenases) [Novosphingobium
           aromaticivorans]
          Length = 266

 Score = 69.7 bits (169), Expect = 4e-11
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 3/193 (1%)
 Frame = +1

Query: 124 ASHSEQKRVIAICGYGPGISNSVAHLWASHGFQVALLSRTQARLDHGAKEISAKGGHAKG 303
           A H  + +V+ + G GPG+  ++A   A  G  VA++SR+   +D  A +I+A G  A  
Sbjct: 5   ALHMLEDKVVIVTGIGPGLGRTIATEAAKMGADVAMVSRSGGIMDEVAADIAAAGRRALT 64

Query: 304 YAVDLAKPEDVXXXXXXVSQELGTVTVLF---WNPASHAWGDVLSLDIDTIEHNLQHQVT 474
              D+    D            G +  L    + P   A   VL LD+D +    +  V 
Sbjct: 65  IRADITSDADCARVAQETVAAFGRIDGLVNSAYFPGRLA--PVLDLDLDALGRAFEVTVM 122

Query: 475 GLLAAVQQVVPDMASRPGSAILVTGGGLSLAAENRALAKAANAMGGVAVAAGKAAQRALV 654
           G +  ++ VVP M  + G +++  G        ++   K     GG   AA KAAQ +L 
Sbjct: 123 GTIRMIRAVVPQMEKQGGGSVVNVG--------SQVARKVVPQQGG--YAATKAAQASLT 172

Query: 655 HSLXEGLAPKGIR 693
             L   L  KGIR
Sbjct: 173 RYLAAELGSKGIR 185



EST assemble image


clone accession position
1 LC060b09_r AV623189 1 410
2 LCL013h05_r AV626697 18 490
3 MX014c10_r BP086682 241 702




Chlamydomonas reinhardtii
Kazusa DNA Research Institute