Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002953A_C01 KCC002953A_c01
(527 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_317163.1| ENSANGP00000018287 [Anopheles gambiae] gi|21300... 70 1e-11
ref|NP_495013.1| serine/aRginine rich pre-mRNA SPlicing factor, ... 69 4e-11
gb|AAK93651.1| unknown protein [Arabidopsis thaliana] 64 1e-09
pir||T50647 serine/arginine-rich protein [imported] - Arabidopsi... 64 1e-09
gb|AAH46668.1| Similar to splicing factor, arginine/serine-rich ... 62 3e-09
>ref|XP_317163.1| ENSANGP00000018287 [Anopheles gambiae] gi|21300086|gb|EAA12231.1|
ENSANGP00000018287 [Anopheles gambiae str. PEST]
Length = 264
Score = 70.5 bits (171), Expect = 1e-11
Identities = 70/221 (31%), Positives = 94/221 (41%), Gaps = 47/221 (21%)
Frame = +1
Query: 1 LHTILYTYSKSSYLPSSPSGPARRPAKKMPRSSRYA----VVVDNISSNTPVRDIEREFA 168
LHT TY+ + P S P+ R + + SRY V V + +N +DIE F
Sbjct: 8 LHTRTTTYNTRA--PRSVRTPSHRAVNEQSKMSRYPHDAKVYVGELGNNASKQDIEEAFG 65
Query: 169 FFGRIRDC-VKDGKHRLALIEFEKSQDATAAWRKMDGFRMDGRQWRVEYAT--------- 318
++G +R+ V A +EFE ++DA A R +DG + GR+ RVE +T
Sbjct: 66 YYGPLRNVWVARNPPGFAFVEFEDARDAEDAVRGLDGRTISGRRARVELSTGRGGRGGGG 125
Query: 319 ---------------REDFRFFGWKWFEH-----SPSPPRYRSRSRSPRR---------- 408
+ D R + H + S R R RSRSPR
Sbjct: 126 GRGGPPRGGGKGGRFQSDDRCYECGGRGHFARDCARSGRRGRKRSRSPRSRSRELRTRSR 185
Query: 409 --SRSPSRSPVRRSRSPDTP-GGNDGRTRNASKSTSPPPRR 522
SRS SRS RRSRS TP G R+ S+ S PRR
Sbjct: 186 SYSRSRSRSRDRRSRSKATPKRGAAANNRSLSRDVSKTPRR 226
>ref|NP_495013.1| serine/aRginine rich pre-mRNA SPlicing factor, Serpin (22.6 kD)
(rsp-4) [Caenorhabditis elegans]
gi|3929375|sp|Q09511|SFR2_CAEEL Putative splicing
factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
gi|7439997|pir||T15917 hypothetical protein EEED8.7 -
Caenorhabditis elegans gi|733604|gb|AAC46767.1| Sr
protein (splicing factor) protein 4, isoform a
[Caenorhabditis elegans]
Length = 196
Score = 68.9 bits (167), Expect = 4e-11
Identities = 59/154 (38%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Frame = +1
Query: 115 VDNISSNTPVRDIEREFAFFGRI------RDCVKDGKHRLALIEFEKSQDATAAWRKMDG 276
+DN+S T D+ R F +G I RD + F + +DA A + DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 277 FRMDGRQWRV---EYATREDFRFF--GWKWFEHSPSP------PRYRSRSRSPRRSRSPS 423
+DGR+ RV +Y D R G S SP PRY SRSRSPRRSRS +
Sbjct: 83 KLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRY-SRSRSPRRSRSRT 141
Query: 424 RSPVRRSRSPDTPGGNDGRTRNASKSTSPPPRRE 525
RSP R R D+P D R + S+S SPPPR +
Sbjct: 142 RSPPSRDRR-DSP---DRRDNSRSRSRSPPPRED 171
>gb|AAK93651.1| unknown protein [Arabidopsis thaliana]
Length = 263
Score = 63.9 bits (154), Expect = 1e-09
Identities = 67/217 (30%), Positives = 89/217 (40%), Gaps = 54/217 (24%)
Frame = +1
Query: 34 SYLPSSPSGPARRPAKKMPRSSRY---------AVVVDNISSNTPVRDIEREFAFFGRI- 183
SY PS P G RR PR RY +++V N+ + D+ + F FG +
Sbjct: 5 SYTPSPPRGYGRRGRSPSPRG-RYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVK 63
Query: 184 -----RDCVKDGKHRLALIEFEKSQDATAAWRKMDGFRMDGRQWRVEYATREDFRFF--- 339
RD ++F DA A MDG+ + GR+ V +A +
Sbjct: 64 DIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMR 123
Query: 340 -----GWKWFEHSPSPPRYRSRSRS--PRRSRSPSRS------PVRR------------- 441
G ++ + +PPRY SRSRS PRR RS SRS P RR
Sbjct: 124 ARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERY 183
Query: 442 ------SRSPDTPGGNDGRT----RNASKSTSPPPRR 522
SRSP + G GR+ R S+S SP PRR
Sbjct: 184 DGRRSYSRSPASDGSR-GRSLTPVRGKSRSLSPSPRR 219
Score = 35.8 bits (81), Expect = 0.35
Identities = 26/52 (50%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 361 SPSPPRYRSRSRSPRRSRSPSRS------PVRRSRSPDTPGGNDGRTRNASK 498
SPSP R S SRSPRRSRSP RS RSRS GG R+ S+
Sbjct: 214 SPSPRR--SISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPSQ 263
Score = 35.0 bits (79), Expect = 0.59
Identities = 25/54 (46%), Positives = 30/54 (55%)
Frame = +1
Query: 361 SPSPPRYRSRSRSPRRSRSPSRSPVRRSRSPDTPGGNDGRTRNASKSTSPPPRR 522
S +P R +SRS SP RS SRSP RRSRSP R + +S +P P R
Sbjct: 202 SLTPVRGKSRSLSPSPRRSISRSP-RRSRSP----------RRSRRSYTPEPAR 244
>pir||T50647 serine/arginine-rich protein [imported] - Arabidopsis thaliana
gi|6572475|gb|AAF17288.1|AF099940_1 Serine/arginine-rich
protein [Arabidopsis thaliana]
gi|9843659|emb|CAC03603.1| SC35-like splicing factor
SCL33, 33 kD [Arabidopsis thaliana]
Length = 287
Score = 63.9 bits (154), Expect = 1e-09
Identities = 67/217 (30%), Positives = 89/217 (40%), Gaps = 54/217 (24%)
Frame = +1
Query: 34 SYLPSSPSGPARRPAKKMPRSSRY---------AVVVDNISSNTPVRDIEREFAFFGRI- 183
SY PS P G RR PR RY +++V N+ + D+ + F FG +
Sbjct: 5 SYTPSPPRGYGRRGRSPSPRG-RYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVK 63
Query: 184 -----RDCVKDGKHRLALIEFEKSQDATAAWRKMDGFRMDGRQWRVEYATREDFRFF--- 339
RD ++F DA A MDG+ + GR+ V +A +
Sbjct: 64 DIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMR 123
Query: 340 -----GWKWFEHSPSPPRYRSRSRS--PRRSRSPSRS------PVRR------------- 441
G ++ + +PPRY SRSRS PRR RS SRS P RR
Sbjct: 124 ARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERY 183
Query: 442 ------SRSPDTPGGNDGRT----RNASKSTSPPPRR 522
SRSP + G GR+ R S+S SP PRR
Sbjct: 184 DGRRSYSRSPASDGSR-GRSLTPVRGKSRSLSPSPRR 219
Score = 36.2 bits (82), Expect = 0.27
Identities = 31/68 (45%), Positives = 34/68 (49%), Gaps = 14/68 (20%)
Frame = +1
Query: 361 SPSPPRYRSRSRSPRRSRSP--------------SRSPVRRSRSPDTPGGNDGRTRNASK 498
SPSP R S SRSPRRSRSP SRSP RRSRSP R + +
Sbjct: 214 SPSPRR--SISRSPRRSRSPSPKRNRSVSPRRSISRSP-RRSRSP----------RRSRR 260
Query: 499 STSPPPRR 522
S +P P R
Sbjct: 261 SYTPEPAR 268
Score = 33.5 bits (75), Expect = 1.7
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Frame = +1
Query: 361 SPSPPRYRS------------RSRSPRRSRSPSRSPVRRSRSPDTPGGNDGRTRNASK 498
SPSP R RS RSRSPRRSR RSRS GG R+ S+
Sbjct: 230 SPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPSQ 287
>gb|AAH46668.1| Similar to splicing factor, arginine/serine-rich 6 [Xenopus laevis]
Length = 667
Score = 62.4 bits (150), Expect = 3e-09
Identities = 52/151 (34%), Positives = 76/151 (49%), Gaps = 13/151 (8%)
Frame = +1
Query: 88 PRSSRYAVVVDNISSNTPVRDIEREFAFFGRIR--DCVKDGKHRLALIEFEKSQDATAAW 261
P + + +VV+N+SS +D++ G + D K+ + +IEF D A
Sbjct: 101 PVRTEFRLVVENLSSRCSWQDLKDFMRQAGEVTYADAHKERANE-GVIEFRSYSDMKRAV 159
Query: 262 RKMDGFRMDGRQWR-VEYATREDFRFFGWKWFEHSPSPPRYRSRSRSPR--RSRSPSRSP 432
K+DG ++GR+ R VE TR + G S S R RSRSR P RSRS SRSP
Sbjct: 160 EKLDGTEINGRRIRLVEGKTRHRRPYSGSHSRSRSRSRRRSRSRSRHPSHSRSRSQSRSP 219
Query: 433 VRRSRS--------PDTPGGNDGRTRNASKS 501
++SRS +PG + R+R+ S+S
Sbjct: 220 AKKSRSRSLAKSSHSQSPGKSQSRSRSRSRS 250
