KCC002952A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002952A_C01 KCC002952A_c01
cccacatattgacacgtcaATCAGGCCATCTACTGCAGCTCACAGAGAAATCGAGAAAGA
AGGAATCCATCGTCGTAGAAGCATCCACCCGGCGTCAAAGCCAGTGTTCCCAAAGCGTGA
CAGTTCGGCGCATCACTTGCTCTATATTGCTACATTCAGCCGGTGGCTTTGGGTAAACAA
TGCCGACGAAGCCGGCCATCTCCATCTTTCGGCAACTCATACGCGCGGTGCACACGACGT
TCCAGGGCGACCCGCCAGCGATTGTCGCTGCTCGGAAAGAACTGCGGACTGCATTTGAGG
CCAACCGTGGCCTCACCGAAAAATCAAAAGTCAATGCGGCGCTTGCCGAGGCCGTGGAGG
CAAACGAGTTCATCCGCAATAACATTATTCAGGCAACCAAGAAGGATTGCGGCAGCTATG
AGATTGCCCCAGAGAAGGCTGCCAGCTGCGGAGTCTTGAAGACGCGGAGCGnCGGCCCGC
GACTGGCTCAAAGCACGGGTGATTTCACGCAGTCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002952A_C01 KCC002952A_c01
         (516 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567133.1| expressed protein [Arabidopsis thaliana] gi|112...    57  1e-07
ref|XP_330195.1| hypothetical protein ( (AL389890) conserved hyp...    46  2e-04
pir||T50971 hypothetical protein B24P7.260 [imported] - Neurospo...    45  5e-04
gb|EAA18899.1| hypothetical protein [Plasmodium yoelii yoelii]         40  0.018
ref|XP_033003.1| hypothetical protein XP_033003 [Homo sapiens]         39  0.039

>ref|NP_567133.1| expressed protein [Arabidopsis thaliana] gi|11283537|pir||T48070
           hypothetical protein F26K9.240 - Arabidopsis thaliana
           gi|7362761|emb|CAB83131.1| hypothetical protein
           [Arabidopsis thaliana] gi|21554092|gb|AAM63173.1|
           unknown [Arabidopsis thaliana]
           gi|28466831|gb|AAO44024.1| At3g62810 [Arabidopsis
           thaliana]
          Length = 106

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 31/82 (37%), Positives = 44/82 (52%)
 Frame = +3

Query: 180 MPTKPAISIFRQLIRAVHTTFQGDPPAIVAARKELRTAFEANRGLTEKSKVNAALAEAVE 359
           M T  A+  +R L+RA   +F GD   + A+  E+R  FE NR +   S +   L EA E
Sbjct: 1   MVTGEALIAYRALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEARE 60

Query: 360 ANEFIRNNIIQATKKDCGSYEI 425
           A +FI   I+QA   + G YE+
Sbjct: 61  ATQFISTMIVQAKLNERGGYEM 82

>ref|XP_330195.1| hypothetical protein ( (AL389890) conserved hypothetical protein
           [Neurospora crassa] ) gi|16945379|emb|CAB97291.2|
           conserved hypothetical protein [Neurospora crassa]
           gi|28927202|gb|EAA36158.1| hypothetical protein (
           (AL389890) conserved hypothetical protein [Neurospora
           crassa] )
          Length = 111

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +3

Query: 195 AISIFRQLIRAVHTTFQGDPPAIVAARKELRTAFEANRGLTEKSKVNA-ALAEAVEANEF 371
           A+  +R L+RA    F GD   + AA + +R  F  N+ +       A A+A A E   F
Sbjct: 3   ALQAYRHLMRAARVAFDGDNRTLTAAYESIRRGFRENQNVPANDPTIAPAIAHAEEVASF 62

Query: 372 IRNNIIQATKKDCGSYEI 425
           +R+N++Q  +KD  +Y++
Sbjct: 63  LRSNVVQG-RKDGETYKL 79

>pir||T50971 hypothetical protein B24P7.260 [imported] - Neurospora crassa
          Length = 114

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 23/70 (32%), Positives = 36/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 195 AISIFRQLIRAVHTTFQGDPPAIVAARKELRTAFEANRGLTEKSKVNA-ALAEAVEANEF 371
           A+  +R L+RA    F GD   + AA + +R  F  N+ +       A A+A A E   F
Sbjct: 3   ALQAYRHLMRAARVAFDGDNRTLTAAYESIRRGFRENQNVPANDPTIAPAIAHAEEVASF 62

Query: 372 IRNNIIQATK 401
           +R+N++Q  K
Sbjct: 63  LRSNVVQGRK 72

>gb|EAA18899.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 104

 Score = 40.0 bits (92), Expect = 0.018
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +3

Query: 180 MPTKPAISIFRQLIRAVHTTFQGDPPAIVAARKELRTAFEANRGLTEKSKVNAALAEAVE 359
           M T     +F+Q+I++ + TF  D  A      +++        + E+  +   L   +E
Sbjct: 1   MTTNSCKYLFKQVIKSCNATFNSDIEAKRNVLNDVKNMIREQIKIKEEKDIKQQL---IE 57

Query: 360 ANEFIRNNIIQAT-KKDCGSYEIAPEK 437
           AN+FI+N+IIQA    + G+Y++  +K
Sbjct: 58  ANDFIKNHIIQAVYNNNTGNYKVELKK 84

>ref|XP_033003.1| hypothetical protein XP_033003 [Homo sapiens]
          Length = 104

 Score = 38.9 bits (89), Expect = 0.039
 Identities = 19/80 (23%), Positives = 37/80 (45%)
 Frame = +3

Query: 198 ISIFRQLIRAVHTTFQGDPPAIVAARKELRTAFEANRGLTEKSKVNAALAEAVEANEFIR 377
           + +F+ L R     F+ D  A+ AAR ++   F+ N+  T   K+   +    +    +R
Sbjct: 8   LQLFKTLHRTRQQVFKNDARALEAARIKINEEFKNNKSETSSKKIEELMKIGSDVELLLR 67

Query: 378 NNIIQATKKDCGSYEIAPEK 437
            ++IQ    D  + ++ P K
Sbjct: 68  TSVIQGIHTDHNTLKLVPRK 87



EST assemble image


clone accession position
1 MX037f02_r BP087566 1 441
2 LC071b01_r AV623964 20 372
3 LC058c11_r AV623055 25 517




Chlamydomonas reinhardtii
Kazusa DNA Research Institute