KCC002948A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002948A_C01 KCC002948A_c01
GAAGTTCTAGGCATAACCACATCAACCCAACACTGAACTCACTCATACTATCGCTCCTCA
CAGACTCCGCTCTTACAAGCCTTCCATCGCACCCGCACGCAGCAACACGCAAGCCGCCTG
GCAATTTACAAATATGTCAACATATTCTGTGCTAGCGCTAGCTGCGCTGGTGCTACTGCT
ATCCGGCAACCGGGCAGTCGATGCAGTTGATGCCCCGGGCCGCGAAGAGCAGCCCTGCGC
GCGGAGCTGCCACACCATCAACTGCGACAATGTCGGTATCCGATATGGCCGGTTCTGCGG
CGTGGGCCACGGCGGCTGCCCTGGCGTGAAGCCGTGCGACCCCGTGGATAAGTGTTGTCA
AAAGCATGACCTCTGCGTTGAGAAGGAGAGCGTATTCTCGTCCAAATGCCACAAGCGCTT
CCTGACATGCCTAGAGAAGCATAAAGAGAAGGACCATGAAGGCTTTGCGCCCAACACGTG
TCCGTACAGTGTAGTCATCCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002948A_C01 KCC002948A_c01
         (502 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB40841.1| putative phospholipase A2 [Oryza sativa (japonic...   115  3e-25
ref|NP_179559.2| phospholipase A2 family protein [Arabidopsis th...   105  2e-22
ref|NP_194675.1| phospholipase A2 family protein [Arabidopsis th...   102  3e-21
ref|NP_194676.2| phospholipase A2 family protein [Arabidopsis th...    97  1e-19
pir||H84579 hypothetical protein At2g19690 [imported] - Arabidop...    91  1e-17

>emb|CAB40841.1| putative phospholipase A2 [Oryza sativa (japonica cultivar-group)]
          Length = 138

 Score =  115 bits (288), Expect = 3e-25
 Identities = 52/114 (45%), Positives = 74/114 (64%)
 Frame = +2

Query: 158 LAALVLLLSGNRAVDAVDAPGREEQPCARSCHTINCDNVGIRYGRFCGVGHGGCPGVKPC 337
           L ALV L +G   + +  +P     PC+RSC  +NCD+VGIRYG++CGVG  GC G +PC
Sbjct: 7   LLALVFLAAG--VLSSATSP--PPPPCSRSCAALNCDSVGIRYGKYCGVGWSGCDGEEPC 62

Query: 338 DPVDKCCQKHDLCVEKESVFSSKCHKRFLTCLEKHKEKDHEGFAPNTCPYSVVI 499
           D +D CC+ HD CV+K+ + S KCH++F  C+ K K+    GF+   CPY + +
Sbjct: 63  DDLDACCRDHDHCVDKKGLMSVKCHEKFKNCMRKVKKAGKIGFS-RKCPYEMAM 115

>ref|NP_179559.2| phospholipase A2 family protein [Arabidopsis thaliana]
           gi|25992715|gb|AAN77229.1| secretory low molecular
           weight phospholipase A2 beta [Arabidopsis thaliana]
          Length = 147

 Score =  105 bits (263), Expect = 2e-22
 Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
 Frame = +2

Query: 230 QPCARSCHTINCDNVGIRYGRFCGVGHGGCPGVKPCDPVDKCCQKHDLCVEKESVFSSKC 409
           + C R+C   NCD + IRYG++CG+GH GCPG +PCD +D CC+ HD CVE   + +  C
Sbjct: 29  EECTRTCIAQNCDTLSIRYGKYCGIGHSGCPGEEPCDDLDACCKIHDHCVELNGMTNISC 88

Query: 410 HKRFLTCLE------KHKEKDHEGFAPNTCPYSVVIP 502
           HK+F  C+       K  +    GF+   CPYSVVIP
Sbjct: 89  HKKFQRCVNRLSKAIKQSKNKKVGFS-TKCPYSVVIP 124

>ref|NP_194675.1| phospholipase A2 family protein [Arabidopsis thaliana]
           gi|25407616|pir||G85343 phospholipase A2-like protein
           [imported] - Arabidopsis thaliana
           gi|7269845|emb|CAB79704.1| phospholipase A2-like protein
           [Arabidopsis thaliana] gi|26006457|gb|AAN63044.1|
           secretory low molecular weight phospholipase A2 gamma
           [Arabidopsis thaliana]
          Length = 187

 Score =  102 bits (253), Expect = 3e-21
 Identities = 42/98 (42%), Positives = 62/98 (62%), Gaps = 6/98 (6%)
 Frame = +2

Query: 227 EQPCARSCHTINCDNVGIRYGRFCGVGHGGCPGVKPCDPVDKCCQKHDLCVEKESVFSSK 406
           ++ C+ +C   NC+++GIRYG++CG+G+ GCPG  PCD +D CC  HD CV+ + +    
Sbjct: 26  QEKCSNTCIAQNCNSLGIRYGKYCGIGYFGCPGEPPCDDLDACCMTHDNCVDLKGMTYVN 85

Query: 407 CHKRFLTCLE------KHKEKDHEGFAPNTCPYSVVIP 502
           CHK+F  C+       KH   +  GF+   CPYS+VIP
Sbjct: 86  CHKQFKRCVNKLSKSIKHSNGEKIGFS-TQCPYSIVIP 122

>ref|NP_194676.2| phospholipase A2 family protein [Arabidopsis thaliana]
           gi|26006459|gb|AAN63045.1| secretory low molecular
           weight phospholipase A2 delta [Arabidopsis thaliana]
          Length = 191

 Score = 96.7 bits (239), Expect = 1e-19
 Identities = 41/98 (41%), Positives = 61/98 (61%), Gaps = 6/98 (6%)
 Frame = +2

Query: 227 EQPCARSCHTINCDNVGIRYGRFCGVGHGGCPGVKPCDPVDKCCQKHDLCVEKESVFSSK 406
           ++ C+++C    C+ +GIRYG++CG+G+ GCPG  PCD +D CC  HD CV+ + +    
Sbjct: 26  QEKCSKTCIAQKCNVLGIRYGKYCGIGYFGCPGEPPCDDLDDCCMTHDNCVDLKGMTYVD 85

Query: 407 CHKRFLTCLEKHKEKDHE------GFAPNTCPYSVVIP 502
           CHK+F  C+ + K+   E      GF+   CPYS VIP
Sbjct: 86  CHKQFQRCVNELKQSIQESNNQKVGFS-KECPYSTVIP 122

>pir||H84579 hypothetical protein At2g19690 [imported] - Arabidopsis thaliana
           gi|3687248|gb|AAC62146.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 133

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 39/83 (46%), Positives = 52/83 (61%), Gaps = 6/83 (7%)
 Frame = +2

Query: 272 VGIRYGRFCGVGHGGCPGVKPCDPVDKCCQKHDLCVEKESVFSSKCHKRFLTCLE----- 436
           + IRYG++CG+GH GCPG +PCD +D CC+ HD CVE   + +  CHK+F  C+      
Sbjct: 29  LSIRYGKYCGIGHSGCPGEEPCDDLDACCKIHDHCVELNGMTNISCHKKFQRCVNRLSKA 88

Query: 437 -KHKEKDHEGFAPNTCPYSVVIP 502
            K  +    GF+   CPYSVVIP
Sbjct: 89  IKQSKNKKVGFS-TKCPYSVVIP 110



EST assemble image


clone accession position
1 LC057g11_r AV623015 1 502
2 LC100g02_r AV625986 1 316




Chlamydomonas reinhardtii
Kazusa DNA Research Institute