KCC002940A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002940A_C01 KCC002940A_c01
cagtgctgtggcttacagcggcatgcattggctggcctgGCCATCCCTAGGCCAGCTGAC
CAGAAGTTTTCACTCCAACTATGCGATGCAAAAAGGTCCTTGCTCAGCGAAAATGCGCAA
TCACACCAGCGCCGTGTCGTGAGCAAATCTTGAGCGAGTCGTTGTGGTCATGGTCTGTCA
ATCAGGTATCAATGCAACTCCGCGTCTCCGGCTCTCCGCCTGCCGGCCATCCCTGCATGT
CAGTCACCTGAGCGCCACCGCCTCACGCCCTCAGCTTGCCCACTGCGACCCCACACCATA
CAACAGCCTCACCCAGCACAACATGCACGAGTGCATCCTTCGCGCACTCTGGTCAGTCTG
GTGCACTCGGTGCGCGACCCACCTGCTGCCCTGCCAAATGGGCGCCAATCGCCCCGCAAC
CCGCTCCCACAGCCCCGCCCGCTCTTAGTGCTTCTTCTTGAGCCCCTTGAACCAAGTGTC
AATCTTGTCCCGCTCAATCTTCGTGATGGGGCCGAAGTCGAAGCTGCGCAGGCCGCTGAG
GTGCGCGACCACCCACATCTTGTAGTTCTTCTGCTCCGAGATGGGGTTCCTATGCAGGGG
AGGCGGGAAATGGCTATGGGGGTGCACAAGAACGTGGGAAACGCATGCTCCAGGCGACCG
GCTTCTAAATGCGTTTCCGGCTGACCCACAGTCCCGGAGGGACAGAGCAGATGGAGACTG
CCTTGAATGGCGGGAGCTACGCCGACGCCGGGCGACATATTATtgactcctgtctcacca
cctactcacccgtgcagcgtgagcttgctgaggcgtggcaggtgctgcagtttgaggacg
tcg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002940A_C01 KCC002940A_c01
         (843 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178...    49  1e-04
ref|NP_044469.1| RL2 [Human herpesvirus 2] gi|124135|sp|P28284|I...    45  0.001
dbj|BAB24223.1| unnamed protein product [Mus musculus]                 45  0.001
ref|NP_034869.1| lymphocyte antigen 64 [Mus musculus] gi|115198|...    45  0.001
gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]                       45  0.001

>ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178092|gb|EAA06612.2|
           ENSANGP00000004749 [Anopheles gambiae str. PEST]
          Length = 633

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
 Frame = +3

Query: 267 ALSLPTATPHHTTASPSTTCTSASFAHSGQSGALGARPTCCPAKWAPIAPQPA-PTAPPA 443
           A +   A P      P++ CT +  A +  +    ARP+ CP +  P AP  A P  PPA
Sbjct: 501 AAAAAAAAPAAVAVRPASPCTPSPCAAACPTSPSAARPSGCPGRSPPSAPPAARPAGPPA 560

Query: 444 L-------SASS*AP*TKCQSCPAQSS*WGRSRSCAGR*GARPPTSCS---SSAP 578
                     S  AP ++  + PA +S  G    C+    ARPP S +   SSAP
Sbjct: 561 ACTARAPPGRSRSAPPSRSSAGPAVASGCGSPPDCSASCAARPPASPAAPRSSAP 615

 Score = 32.7 bits (73), Expect = 7.7
 Identities = 31/94 (32%), Positives = 40/94 (41%), Gaps = 7/94 (7%)
 Frame = +1

Query: 199 SASPALRLPAIPACQSPERHRLTPSACPLRPHTIQQPHPAQHARVHPSRTLVSL------ 360
           SA P   +P +PA   P    + P A P+ P     P P   +R  PS    +L      
Sbjct: 126 SAVPVSPVPPVPA---PPALPIVP-APPVPPPPPPPPPPIPESRAIPSYPAPALPPSTGP 181

Query: 361 -VHSVRDPPAALPNGRQSPRNPLPQPRPLLVLLL 459
            V     PPA LP  +     P P P PL+VL+L
Sbjct: 182 PVPPAPPPPAPLPAAKLLVFGP-PPPPPLIVLVL 214

>ref|NP_044469.1| RL2 [Human herpesvirus 2] gi|124135|sp|P28284|ICP0_HSV2H
           Trans-acting transcriptional protein ICP0 (VMW118
           protein) gi|73650|pir||EDBEXD immediate-early protein
           RL2 - human herpesvirus 2 (strain HG52)
           gi|1869822|emb|CAB06760.1| RL2 [Human herpesvirus 2]
           gi|2626942|dbj|BAA23427.1| Vmw118(ICP0) [Human
           herpesvirus 2]
          Length = 825

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 19/173 (10%)
 Frame = +3

Query: 201 RVSGSPPA----GHPCMSVT*APPPHALSLPTATPHHTTASPSTTCTSASFAHSGQS--- 359
           R SG P A    G P  + T    PHA     A P     S S    S+S + S      
Sbjct: 478 RGSGGPGAEGGPGVPRGTNTPGAAPHAAEGAAARPRKRRGSDSGPAASSSASSSAAPRSP 537

Query: 360 ------GALGARPTCCPAK------WAPIAPQPAPTAPPALSASS*AP*TKCQSCPAQSS 503
                 GA  A P   P          P+AP  A  APP+ S SS A      S  A SS
Sbjct: 538 LAPQGVGAKRAAPRRAPDSDSGDRGHGPLAPASAGAAPPSASPSSQAAVAAASSSSASSS 597

Query: 504 *WGRSRSCAGR*GARPPTSCSSSAPRWGSYAGEAGNGYGGAQERGKRMLQATG 662
               S + +    +   +S S+S+    S AG AG     A   G+R   + G
Sbjct: 598 SASSSSASSSSASSSSASSSSASSSSASSSAGGAGGSVASASGAGERRETSLG 650

>dbj|BAB24223.1| unnamed protein product [Mus musculus]
          Length = 192

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -1

Query: 597 LHRNPISEQKNYKMWVVAHLSGLRSFDFGPITKIERDKIDTWFK-GLKKK 451
           LH NPI E+K Y+ +V+ +L  + +FDF  +T+ +R   + W + G+K K
Sbjct: 134 LHGNPIEEEKGYRQYVLCNLPRITTFDFSGVTRADRSTAEVWKRMGIKPK 183

>ref|NP_034869.1| lymphocyte antigen 64 [Mus musculus] gi|115198|sp|P19467|C114_MOUSE
           Cell surface antigen 114/A10 precursor (Lymphocyte
           antigen 64) gi|109642|pir||A33533 cell surface
           glycoprotein precursor - mouse gi|309106|gb|AAA37239.1|
           cell surface antigen 114/A10 precursor
           gi|19354230|gb|AAH24321.1| Ly64 protein [Mus musculus]
          Length = 573

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 57/203 (28%), Positives = 75/203 (36%), Gaps = 6/203 (2%)
 Frame = +3

Query: 147 ILSESLWSWSVNQVSMQLRVSGSPPAGHPCMSVT*APPPHALSLPTATPHHTTASPSTTC 326
           +LS SL   +V   S     + S     P  +V    P  +    T T     ASP TT 
Sbjct: 6   LLSLSLLLVTVGSSSQASSTTSSSGGTSPPTTVQSQSPGSSSQASTTTSSSGGASPPTTV 65

Query: 327 TSASFAHSGQ-----SGALGARPTCCPAKWAPIAPQPAPTAPPALSASS*AP*TKCQS-C 488
            S S   S Q     S + GA P       +P +   A T   +   +S  P T  QS  
Sbjct: 66  QSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGAS--PPTTVQSQS 123

Query: 489 PAQSS*WGRSRSCAGR*GARPPTSCSSSAPRWGSYAGEAGNGYGGAQERGKRMLQATGF* 668
           P  SS    + S +G  GA PPT+  S +P   S A    +  GGA        Q+ G  
Sbjct: 124 PGSSSQASTTTSSSG--GASPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSS 181

Query: 669 MRFRLTHSPGGTEQMETALNGGS 737
            +   T S  G     T +   S
Sbjct: 182 SQVSTTTSSSGGASPPTTVQSQS 204

 Score = 42.0 bits (97), Expect = 0.013
 Identities = 55/196 (28%), Positives = 71/196 (36%), Gaps = 6/196 (3%)
 Frame = +3

Query: 168 SWSVNQVSMQLRVSGSPPAGHPCMSVT*APPPHALSLPTATPHHTTASPSTTCTSASFAH 347
           S S    S     + S     P  +V    P  +    T T     ASP TT  S S   
Sbjct: 40  SQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGS 99

Query: 348 SGQ-----SGALGARPTCCPAKWAPIAPQPAPTAPPALSASS*AP*TKCQS-CPAQSS*W 509
           S Q     S + GA P       +P +   A T   +   +S  P T  QS  P  SS  
Sbjct: 100 SSQASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGAS--PPTTVQSQSPGSSSQA 157

Query: 510 GRSRSCAGR*GARPPTSCSSSAPRWGSYAGEAGNGYGGAQERGKRMLQATGF*MRFRLTH 689
             + S +G  GA PPT+  S +P   S      +  GGA        Q+ G   +   T 
Sbjct: 158 STTTSSSG--GASPPTTVQSQSPGSSSQVSTTTSSSGGASPPTTVQSQSPGSSSQPGPTQ 215

Query: 690 SPGGTEQMETALNGGS 737
             GG     T  +GGS
Sbjct: 216 PSGGASS-STVPSGGS 230

>gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]
          Length = 1325

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
 Frame = +3

Query: 126  PAPCREQILSESLWSWSVNQVSMQLRVSGSPPAGH---PCMSVT*APPPHALSLPTATPH 296
            P+       S S  + S +  S     S +P A     P  S + AP   + S P+++  
Sbjct: 947  PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSS 1006

Query: 297  HTTASPSTTCTSASFAHSGQSGALGARPTCCPAKWAPIAPQPAPTAPPALSASS*AP*TK 476
              +AS S+  +S+S A S  S +  +  +  P+  +  AP  + +AP A S+S  AP + 
Sbjct: 1007 APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSS--APSSS 1064

Query: 477  CQSCPAQSS*WGRSRSCAGR*GARPPTSCSSSAPRWGSYAGEAGNGYGG 623
              S P+ SS      S A    +  P++ SSSAP   S +  +G+G  G
Sbjct: 1065 SSSAPSASS------SSAPSSSSSAPSASSSSAPS-SSSSFLSGSGSDG 1106

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 33/116 (28%), Positives = 57/116 (48%)
 Frame = +3

Query: 231  PCMSVT*APPPHALSLPTATPHHTTASPSTTCTSASFAHSGQSGALGARPTCCPAKWAPI 410
            P  S + AP   + S P+++    +AS S+  +S+S A S  S +  +  +  P+  +  
Sbjct: 800  PSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSS 859

Query: 411  APQPAPTAPPALSASS*AP*TKCQSCPAQSS*WGRSRSCAGR*GARPPTSCSSSAP 578
            AP  + +AP A S+S+ +  +   S  + S+    S S      +  P+S SSSAP
Sbjct: 860  APSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAP 915

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 46/157 (29%), Positives = 71/157 (44%), Gaps = 2/157 (1%)
 Frame = +3

Query: 114  CAITPAPCREQILSESLWSWSVNQVSMQLRVSGSPPAGHPCMSVT*APPPHALSLPTATP 293
            CA   A   E   S S  S S +  S     + S  +     S + AP   + S P+++ 
Sbjct: 654  CATENACKPETESSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSS 713

Query: 294  HHTTASPSTTCTSASFAHSGQSGALGARPTCCPAKWAPIAPQPAPTAPPALSASS*AP*T 473
               +AS S+  +S+S A S  S +  +  +  P+  +  AP  + +AP A S+S  AP +
Sbjct: 714  SAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSS--APSS 771

Query: 474  KCQSCPAQSS*WGRSRSCAG--R*GARPPTSCSSSAP 578
               S P+ SS    S S +      +  P+S SSSAP
Sbjct: 772  SSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAP 808

 Score = 42.7 bits (99), Expect = 0.007
 Identities = 43/136 (31%), Positives = 64/136 (46%), Gaps = 3/136 (2%)
 Frame = +3

Query: 213  SPPAGHPCMSVT*APPPHALSLPTATPHHTTASPSTTCTSA--SFAHSGQSGALGARPTC 386
            S  +  P  S + AP   + S P+A+     +S S++  SA  S A S  S A  A  + 
Sbjct: 909  SSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 968

Query: 387  CPAKWAPIAPQPAPTAPPALSASS*AP*TKCQSCPAQSS*W-GRSRSCAGR*GARPPTSC 563
             P+  +  AP  + ++ P+ S+SS AP     S P+ SS     S S A    +  P++ 
Sbjct: 969  APSS-SSSAPSASSSSAPSSSSSS-APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSAS 1026

Query: 564  SSSAPRWGSYAGEAGN 611
            SSSAP   S A  A +
Sbjct: 1027 SSSAPSSSSSAPSASS 1042

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 43/145 (29%), Positives = 64/145 (43%), Gaps = 3/145 (2%)
 Frame = +3

Query: 153  SESLWSWSVNQVSMQLRVSGSPPAGHPCMSVT*APPPHALSLPTATPHHTTASPSTTCTS 332
            S S  S S +  S     + S  +  P  S + AP   + S P+A+     +S S++  S
Sbjct: 857  SSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPS 916

Query: 333  ASFAH---SGQSGALGARPTCCPAKWAPIAPQPAPTAPPALSASS*AP*TKCQSCPAQSS 503
            AS +    S  S A  A  +  P+  +  AP  + ++ P  S+SS AP     S P+ SS
Sbjct: 917  ASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAP--SSSSSAPSASSSSAPSSSS 974

Query: 504  *WGRSRSCAGR*GARPPTSCSSSAP 578
                  S      +  P+S SSSAP
Sbjct: 975  ------SAPSASSSSAPSSSSSSAP 993

 Score = 41.6 bits (96), Expect = 0.017
 Identities = 39/121 (32%), Positives = 57/121 (46%), Gaps = 3/121 (2%)
 Frame = +3

Query: 258  PPHALSLPTATPHHTTASPSTTCTSA--SFAHSGQSGALGARPTCCPAKWAPIAPQPAPT 431
            P  + S P+A+     +S S++  SA  S A S  S A  A  +  P+  +  AP  + +
Sbjct: 754  PSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSS 813

Query: 432  APPALSASS*AP*TKCQSCPAQSS*W-GRSRSCAGR*GARPPTSCSSSAPRWGSYAGEAG 608
            + P  S+SS AP     S P+ SS     S S A    +  P++ SSSAP   S A  A 
Sbjct: 814  SAP--SSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSAS 871

Query: 609  N 611
            +
Sbjct: 872  S 872

 Score = 41.6 bits (96), Expect = 0.017
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
 Frame = +3

Query: 213  SPPAGHPCMSVT*APPPHALSLPTATPHHTTASPSTTCTSASFAHSGQSGALGARPTCCP 392
            S  +  P  S + AP   + S P+A+     +S S++  SAS + +  S +  A      
Sbjct: 893  SSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSS 952

Query: 393  AKWAPIAPQPAPTAPPALSASS*AP*TKCQSCPAQSS*W--GRSRSCAGR*GARPPTSCS 566
            +  +  +  P+ ++  A S+SS AP     S P+ SS      S S A    +  P++ S
Sbjct: 953  SAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASS 1012

Query: 567  SSAPRWGSYAGEAGN 611
            SSAP   S A  A +
Sbjct: 1013 SSAPSSSSSAPSASS 1027

 Score = 41.6 bits (96), Expect = 0.017
 Identities = 36/120 (30%), Positives = 60/120 (50%)
 Frame = +3

Query: 252  APPPHALSLPTATPHHTTASPSTTCTSASFAHSGQSGALGARPTCCPAKWAPIAPQPAPT 431
            AP   + S P+++    +AS S+  +S+S A S  S +  +  +  P+  +  AP  + +
Sbjct: 715  APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 774

Query: 432  APPALSASS*AP*TKCQSCPAQSS*WGRSRSCAGR*GARPPTSCSSSAPRWGSYAGEAGN 611
            + P+ S+SS AP +   S P+ SS    S S      +  P++ SSSAP   S A  A +
Sbjct: 775  SAPSASSSS-AP-SSSSSAPSASSSSAPSSS-----SSSAPSASSSSAPSSSSSAPSASS 827

 Score = 40.4 bits (93), Expect = 0.037
 Identities = 46/157 (29%), Positives = 71/157 (44%), Gaps = 15/157 (9%)
 Frame = +3

Query: 153  SESLWSWSVNQVSMQLRVSGSPPAGHPCMSVT*APPPHALSLPTAT----PHHTTASPST 320
            S S  S S +  S     + S  +  P  S + AP   + S P+A+    P  ++++PS 
Sbjct: 735  SSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSA 794

Query: 321  TCTSA-----SFAHSGQSGALGARPTCCPAKWAPIAPQPAPTAPPALSAS-----S*AP* 470
            + +SA     S A S  S +  +  +  P+  +  AP  + +AP A S+S     S AP 
Sbjct: 795  SSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPS 854

Query: 471  TKCQSCPAQSS*W-GRSRSCAGR*GARPPTSCSSSAP 578
                S P+ SS     S S A    +  P++ SSSAP
Sbjct: 855  ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAP 891

 Score = 38.5 bits (88), Expect = 0.14
 Identities = 31/109 (28%), Positives = 53/109 (48%)
 Frame = +3

Query: 252  APPPHALSLPTATPHHTTASPSTTCTSASFAHSGQSGALGARPTCCPAKWAPIAPQPAPT 431
            AP   + S P+++    +AS S+  +S+S A S  S +  +  +  P+  +  AP  + +
Sbjct: 1007 APSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 1066

Query: 432  APPALSASS*AP*TKCQSCPAQSS*WGRSRSCAGR*GARPPTSCSSSAP 578
            + P+ S+SS AP +   S P+ SS    S S +   G+     C S  P
Sbjct: 1067 SAPSASSSS-AP-SSSSSAPSASSSSAPSSSSSFLSGSGSDGGCHSDVP 1113



EST assemble image


clone accession position
1 LC054e02_r AV622785 1 548
2 MXL019g11_r BP094226 401 884




Chlamydomonas reinhardtii
Kazusa DNA Research Institute