>KCC002935A_C01 KCC002935A_c01
gagagagaGAGAGAACTAGTTCGAGTTTTTTTTTTTTTTTTTTGCTTGCACCTTGTTACA
GGCGTGTGCACCACCGGTTCGCGTTGTAACCTGTTGCAACCAGGATGCCAAATCTATGGT
GAACTAGTTGGCCTCAATCGCCAAACGTCAATGCTGAGGACATTCCTGTCCAAGTCACTC
CGTGAGCTCATCATGTGACCCTTTGTGTCACAACCTCGGCCTGTGCCATGCCGGTCTATT
GGTCATACTGAACGAACATACTTGCACCTGTCTACGGTCACTGCTAATGCACGGCGATGT
AACATGTCAGAGACGGGGTCCTCTCCCTGCCCGGGTCACTCGTACGAGTTAAATACTGTC
AGTCTCACGTCCATCAAGTCACCTAGCCGTTCCCTGCACCCAACTCATGCGGCATGCCGC
CTCTGCTTTGCATGCCCACGGCCCCTCCACCACAAGCTGGTTCCCTCCAAGAGCCGATGC
TG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002935A_C01 KCC002935A_c01
         (482 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_496624.1| mrna protein like (2M650) [Caenorhabditis elega...    33  1.8
emb|CAA21688.2| Hypothetical protein Y57A10B.1 [Caenorhabditis e...    33  1.8
ref|XP_220964.2| similar to keratin associated protein 4-12; ker...    32  3.0
gb|AAK49818.1| calcium channel subunit alpha 1A [Bos taurus]           32  4.0
ref|NP_114060.1| keratin associated protein 4-12; keratin associ...    32  4.0

>ref|NP_496624.1| mrna protein like (2M650) [Caenorhabditis elegans]
           gi|7510253|pir||T27192 hypothetical protein Y57A10B.1 -
           Caenorhabditis elegans
          Length = 521

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 298 CNMSETGSSPCPGHSYELNTVSLTSIKSPSRSLHPTHAACRLCFACPRPLHHKLVPSKSR 477
           C+   T    CP    EL + S +S+ S +RS       CR+C  C  P  +  + S  R
Sbjct: 155 CHHCSTTDLTCPKTQKELPSPSASSVYSLARSDMSNEPLCRICHCCWPPDSNDPLISPCR 214

Query: 478 C 480
           C
Sbjct: 215 C 215

>emb|CAA21688.2| Hypothetical protein Y57A10B.1 [Caenorhabditis elegans]
          Length = 470

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 298 CNMSETGSSPCPGHSYELNTVSLTSIKSPSRSLHPTHAACRLCFACPRPLHHKLVPSKSR 477
           C+   T    CP    EL + S +S+ S +RS       CR+C  C  P  +  + S  R
Sbjct: 155 CHHCSTTDLTCPKTQKELPSPSASSVYSLARSDMSNEPLCRICHCCWPPDSNDPLISPCR 214

Query: 478 C 480
           C
Sbjct: 215 C 215

>ref|XP_220964.2| similar to keratin associated protein 4-12; keratin associated
           protein 4.12 [Rattus norvegicus]
          Length = 440

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 62  ACAPPVRVVTCCNQDAKSMVN*LASIAKRQC*GHSC-PSHSVSSSCDPLCHNLGLC 226
           +C  P+ + + C      +V    S     C    C PS SVSS C P+C    +C
Sbjct: 94  SCGGPICLPSSCRSQTWQLVTCEDSCGSSGCGSQCCQPSCSVSSCCQPVCCEATIC 149

>gb|AAK49818.1| calcium channel subunit alpha 1A [Bos taurus]
          Length = 157

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +1

Query: 214 PRPVPCRSIGHTERTYLHLSTVTANARRCNMSETGSSPCPGHSYELNTVSLTSIKSPSRS 393
           P P P  +  + +     +S  TAN    N S  G    P +S  +   S T   S   +
Sbjct: 69  PTPAPTTTATNPQNA---VSRRTAN-NPGNPSNPGPPKTPENSLIVTNPSSTQANSAKTA 124

Query: 394 LHPTHAACRLCFACPRPLHHKLV 462
             P H    +  ACP PL+H ++
Sbjct: 125 RKPDHTTVDIPPACPPPLNHTII 147

>ref|NP_114060.1| keratin associated protein 4-12; keratin associated protein 4.12
           [Homo sapiens] gi|12655460|emb|CAC27582.1| keratin
           associated protein 4.12 [Homo sapiens]
           gi|13278825|gb|AAH04180.1|AAH04180 Similar to RIKEN cDNA
           1110054P19 gene [Homo sapiens]
           gi|13278909|gb|AAH04212.1|AAH04212 Similar to RIKEN cDNA
           1110054P19 gene [Homo sapiens]
          Length = 201

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 29/107 (27%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
 Frame = +2

Query: 47  CTLLQACAPPVRVVTCCNQDAKSMVN*LASIAKRQC*GHSC-------PSHSVSSSCDPL 205
           C     C P     TCC          ++S  + QC    C       PS  +SSSC P 
Sbjct: 95  CCQPTCCRPSCCQTTCCRTTCCRPSCCVSSCCRPQCCQSVCCQPTCCRPSCCISSSCCPS 154

Query: 206 CHNLGLCHAGLLVILNEHTCTCLRSLLMHGDVTCQRRGPLPARVTRT 346
           C     C            C CLR +   G V+C      P  V  T
Sbjct: 155 CCESSCC----------RPCCCLRPVC--GRVSCHTTCYRPTCVIST 189

EST assemble image

clone accession position 1 LC085h08_r AV625024 1 272 2 LC052d03_r AV622643 9 486 3 MX241g12_r BP091622 9 509 4 LC097h05_r AV625791 28 344

---