KCC002934A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002934A_C01 KCC002934A_c01
gacagtctggaaccgctaaaattgctgcataCGCACCATAAGCTATACGGGTTGCGCGCA
TTTCATGTCTGTCGCAGCACTGTTACGATAGGCTAGATCAACCAAACTACACCTGTCTTA
TACAAAATAAGTTTTAGCCGTTTAGGACACTGAGCTGCTGCGCCTCAAGAAGGCGGGACT
GGGCTGCGGTCTTCAAGGAGCGCGGCGGGCGCCGCGGTAGCACCCTTGCGCGCGTGAAGA
CACTATGGCTGCAGTTGCACCGGCTGCCGCGTATCTGGGTGACCCCGTAGAATCGCCCCC
CTCGGATGGCATCTCGCGCGTCATATTCAGTCGCACCAGTGACCTCTTGCTAGCCGCGTC
GTGGGATAAGAACCTGCACCTATACGACGCGAGCACGCGCCTCCCACGCGCCTCCTTCTC
GCACCACGCACCCCTGCTGGATTGCTGCTTTGAGAGCGACGGGACTGTGTATGCGGCCGG
ACTGGACGGCCAAATCAAGCGCTATGACACTCAAACAACAACAAGCGCGGTCCTGGGCAC
ACACTCGGCCGCGGTGCAGTCACTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002934A_C01 KCC002934A_c01
         (566 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566644.1| mitotic checkpoint protein [Arabidopsis thalian...    87  1e-16
gb|AAG51772.1|AC079674_5 mitotic checkpoint protein, 3' partial;...    87  1e-16
ref|NP_175413.1| mitotic checkpoint protein, putative [Arabidops...    87  1e-16
dbj|BAC57743.1| putative mitotic checkpoint protein [Oryza sativ...    84  1e-15
gb|AAM65609.1| mitotic checkpoint protein, putative [Arabidopsis...    78  7e-14

>ref|NP_566644.1| mitotic checkpoint protein [Arabidopsis thaliana]
           gi|25455792|pir||T52386 mitotic checkpoint protein
           [imported] - Arabidopsis thaliana
           gi|9294423|dbj|BAB02543.1| mitotic checkpoint protein
           [Arabidopsis thaliana] gi|21593004|gb|AAM64953.1|
           mitotic checkpoint protein, putative [Arabidopsis
           thaliana] gi|28393726|gb|AAO42274.1| putative mitotic
           checkpoint protein [Arabidopsis thaliana]
           gi|29824353|gb|AAP04137.1| putative mitotic checkpoint
           protein [Arabidopsis thaliana]
          Length = 340

 Score = 87.4 bits (215), Expect = 1e-16
 Identities = 44/105 (41%), Positives = 60/105 (56%)
 Frame = +2

Query: 245 MAAVAPAAAYLGDPVESPPSDGISRVIFSRTSDLLLAASWDKNLHLYDASTRLPRASFSH 424
           M  V P+A   G  + +PPSDGIS + FS  SD LL +SWDK + LYD ST   +  F H
Sbjct: 1   MTTVTPSA---GRELSNPPSDGISNLRFSNNSDHLLVSSWDKRVRLYDVSTNSLKGEFLH 57

Query: 425 HAPLLDCCFESDGTVYAAGLDGQIKRYDTQTTTSAVLGTHSAAVQ 559
              +LDCCF  D + ++ G D +++R         +LGTH  AV+
Sbjct: 58  GGAVLDCCFHDDFSGFSVGADYKVRRIVFNVGKEDILGTHDKAVR 102

>gb|AAG51772.1|AC079674_5 mitotic checkpoint protein, 3' partial; 47356-48732 [Arabidopsis
           thaliana]
          Length = 250

 Score = 87.4 bits (215), Expect = 1e-16
 Identities = 41/95 (43%), Positives = 57/95 (59%)
 Frame = +2

Query: 275 LGDPVESPPSDGISRVIFSRTSDLLLAASWDKNLHLYDASTRLPRASFSHHAPLLDCCFE 454
           +G  + +PPSDGIS + FS  SD LL +SWDK++ LYDA+  L R  F H   +LDCCF 
Sbjct: 7   IGRELSNPPSDGISNLRFSNNSDHLLVSSWDKSVRLYDANGDLMRGEFKHGGAVLDCCFH 66

Query: 455 SDGTVYAAGLDGQIKRYDTQTTTSAVLGTHSAAVQ 559
            D + ++   D +++R D       VLGTH   V+
Sbjct: 67  DDSSGFSVCADTKVRRIDFNAGKEDVLGTHEKPVR 101

>ref|NP_175413.1| mitotic checkpoint protein, putative [Arabidopsis thaliana]
           gi|12597855|gb|AAG60165.1|AC074110_3 mitotic checkpoint
           protein, putative [Arabidopsis thaliana]
          Length = 339

 Score = 87.4 bits (215), Expect = 1e-16
 Identities = 41/95 (43%), Positives = 57/95 (59%)
 Frame = +2

Query: 275 LGDPVESPPSDGISRVIFSRTSDLLLAASWDKNLHLYDASTRLPRASFSHHAPLLDCCFE 454
           +G  + +PPSDGIS + FS  SD LL +SWDK++ LYDA+  L R  F H   +LDCCF 
Sbjct: 7   IGRELSNPPSDGISNLRFSNNSDHLLVSSWDKSVRLYDANGDLMRGEFKHGGAVLDCCFH 66

Query: 455 SDGTVYAAGLDGQIKRYDTQTTTSAVLGTHSAAVQ 559
            D + ++   D +++R D       VLGTH   V+
Sbjct: 67  DDSSGFSVCADTKVRRIDFNAGKEDVLGTHEKPVR 101

>dbj|BAC57743.1| putative mitotic checkpoint protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 364

 Score = 84.3 bits (207), Expect = 1e-15
 Identities = 40/94 (42%), Positives = 55/94 (57%)
 Frame = +2

Query: 275 LGDPVESPPSDGISRVIFSRTSDLLLAASWDKNLHLYDASTRLPRASFSHHAPLLDCCFE 454
           LG  +  PPSDG+S + FS+ SD LL +SWDK + LYDA   +PR  F H A +L CCF 
Sbjct: 24  LGKELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLYDAEANVPRGVFMHAASVLGCCFH 83

Query: 455 SDGTVYAAGLDGQIKRYDTQTTTSAVLGTHSAAV 556
            D + ++A  D  ++R    +  +  L  H AAV
Sbjct: 84  DDSSGFSASADNTVRRLAFSSGGNYFLVRHDAAV 117

>gb|AAM65609.1| mitotic checkpoint protein, putative [Arabidopsis thaliana]
          Length = 314

 Score = 78.2 bits (191), Expect = 7e-14
 Identities = 39/92 (42%), Positives = 52/92 (56%)
 Frame = +2

Query: 290 ESPPSDGISRVIFSRTSDLLLAASWDKNLHLYDASTRLPRASFSHHAPLLDCCFESDGTV 469
           E+P  D +SR+ FS  S+ LL ASWD  L LY+  +       +  A LLDCCFE++ T 
Sbjct: 9   ENPIEDAVSRLRFSPQSNNLLVASWDSYLRLYNVESSSLSLELNSQAALLDCCFENESTS 68

Query: 470 YAAGLDGQIKRYDTQTTTSAVLGTHSAAVQSL 565
           YA+G DG I+RYD    T   +G H     S+
Sbjct: 69  YASGSDGFIRRYDLNAGTFDTIGRHDDIATSI 100



EST assemble image


clone accession position
1 LC051h04_r AV622608 1 512
2 LCL043b10_r AV628520 32 566




Chlamydomonas reinhardtii
Kazusa DNA Research Institute