KCC002932A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002932A_C01 KCC002932A_c01
caacatcttcgaggtggacgtggacgcgccggtgaccaaggaggtgtgcatcctCATCGC
CATGCTCATCTTCCTGCGCCTGTGCATCTATTACGCGCTGCAGTACAAGACCACCTTCAA
GGGCCGGAACTAAGAGGCATGGGCTGCGGCGCAGCCAAGGAGCTAGCGGCGTCTAGAGTC
GCGCAGTGTGCAGATCGTTGGGGGCAGCGCCTGGGCACTGCGATACCGACACTGTTCTAC
AGCGCTGGTAAGGGGTGTGTCAAAGGATCTGGGTACGAGAGGGTCGATAGCCTGGGGCCA
CGGAGAGCCGTGTGGAGATAGGGCTGCACGTGCGACAATACATATGCAGTCACGCTTGGG
CCAAATTTGAAGTCCGTAAGCAAATGAAGTTGTGAGGAGCTGGGGGGCAGGCATGTACGG
GCTGCGGCAAGGGGTGTCCTGGGTGTATGGCCTATTTATGTGCATGCAAGGTATGGACCC
AAGTACACCTAATGTGTGAGGCCGCTGCCGTTGTCCTTGTCAGTCACGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002932A_C01 KCC002932A_c01
         (530 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP93663.1| MRE-binding transcription factor-1La [Oreochromis...    36  0.27
gb|AAP80676.1|AF479057_1 ocs-element binding factor 1 [Triticum ...    36  0.35
dbj|BAC31920.1| unnamed protein product [Mus musculus]                 36  0.35
ref|ZP_00049111.1| COG1028: Dehydrogenases with different specif...    36  0.35
ref|XP_305505.1| hypothetical protein XP_305505 [Homo sapiens] g...    35  0.60

>gb|AAP93663.1| MRE-binding transcription factor-1La [Oreochromis aureus x
           Oreochromis niloticus]
          Length = 811

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 32/115 (27%), Positives = 46/115 (39%), Gaps = 6/115 (5%)
 Frame = -1

Query: 446 TPRTPLAAARTCLPPSSSQLHLLTDFKFGPSVTAYVLSHVQPYLHTAL------RGPRLS 285
           TP +  A   T  PP+  QL+        P  +    +HV P  + AL      +     
Sbjct: 467 TPASITANVSTTQPPAFMQLNGPQQISDVPQASVQPQNHVTPQQYVALPPTFLQQDSTTQ 526

Query: 284 TLSYPDPLTHPLPAL*NSVGIAVPRRCPQRSAHCATLDAASSLAAPQPMPLSSGP 120
           T   P P+T P PA   ++    P   P   A   T DA + +A P P+  + GP
Sbjct: 527 TTPLPPPITTPAPA--PALTATAPGPGPAVVA-ATTTDALAPVAQPVPLANNPGP 578

>gb|AAP80676.1|AF479057_1 ocs-element binding factor 1 [Triticum aestivum]
          Length = 210

 Score = 35.8 bits (81), Expect = 0.35
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 9   SRWTWTRR*PRRCASSSPCSSSCACASITRCSTRPPSRAG---TKRHGLRRSQGASG 170
           S   WTRR P  C+  +P SS+  CA  TRCS    S A    T R   R +   SG
Sbjct: 123 SSCAWTRRTP--CSGRAPPSSATGCAPSTRCSASSRSSAASPWTSRRSARPTTPCSG 177

>dbj|BAC31920.1| unnamed protein product [Mus musculus]
          Length = 818

 Score = 35.8 bits (81), Expect = 0.35
 Identities = 29/96 (30%), Positives = 41/96 (42%)
 Frame = -1

Query: 407 PPSSSQLHLLTDFKFGPSVTAYVLSHVQPYLHTALRGPRLSTLSYPDPLTHPLPAL*NSV 228
           PPS S L     +    S  +Y LSH QPYL  +   P  S+     P   P P++ +  
Sbjct: 196 PPSQSYLAPTPSYSSSSSSQSY-LSHSQPYLPPSQASPSRSSQGPSKPQLPPPPSIPSGN 254

Query: 227 GIAVPRRCPQRSAHCATLDAASSLAAPQPMPLSSGP 120
             A+ +   +  A   T  A    AAP+P P +  P
Sbjct: 255 KTAIQQEPLESGAKNKT--AEQKQAAPEPDPSTMTP 288

>ref|ZP_00049111.1| COG1028: Dehydrogenases with different specificities (related to
           short-chain alcohol dehydrogenases) [Magnetospirillum
           magnetotacticum]
          Length = 329

 Score = 35.8 bits (81), Expect = 0.35
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +1

Query: 7   LRGGRGRAGDQGGVHPHRHAHLPAPVHLLRAAVQDHLQGPELR-GMGCGAAKELAASRVA 183
           LR  R     + GV   RHA L   V LLR    +HL  P  R GM   A  EL  +R +
Sbjct: 30  LRHARSGPAPRRGVQRPRHARLAGAVELLRLRRPEHLPRPRRRAGMSTEAGTELNTARKS 89

Query: 184 QCADRWGQRLGTAIPTLFYSAG 249
                    LG A      +AG
Sbjct: 90  VLVVGGASGLGAATVRALAAAG 111

>ref|XP_305505.1| hypothetical protein XP_305505 [Homo sapiens]
           gi|30151415|ref|XP_305507.1| hypothetical protein
           XP_305507 [Homo sapiens]
          Length = 232

 Score = 35.0 bits (79), Expect = 0.60
 Identities = 21/54 (38%), Positives = 26/54 (47%)
 Frame = +3

Query: 9   SRWTWTRR*PRRCASSSPCSSSCACASITRCSTRPPSRAGTKRHGLRRSQGASG 170
           SR +WT   PRRC    PC  +    S   C +RP SR G  R   R+   A+G
Sbjct: 173 SRESWTGSAPRRC----PCQDASRAGSGV-CRSRPQSRGGGSRKPRRQKAAATG 221



EST assemble image


clone accession position
1 LC051g03_r AV622596 1 530
2 MXL060c04_r BP096529 55 428




Chlamydomonas reinhardtii
Kazusa DNA Research Institute