Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002931A_C01 KCC002931A_c01
(530 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300... 55 7e-07
dbj|BAA85164.1| dopamine receptor D4 [Hylobates syndactylus] 37 2e-05
emb|CAA79527.1| RNA polymerase II second largest subunit [Arabid... 49 3e-05
emb|CAA79528.1| RNA polymerase II second largest subunit [Arabid... 49 3e-05
ref|NP_193902.1| DNA-directed RNA polymerase (EC 2.7.7.6) II sec... 49 3e-05
>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
ENSANGP00000004917 [Anopheles gambiae str. PEST]
Length = 257
Score = 54.7 bits (130), Expect = 7e-07
Identities = 42/106 (39%), Positives = 50/106 (46%), Gaps = 13/106 (12%)
Frame = -2
Query: 406 PQYQPSTRPA--WRSRHLAGAPVP------RSSHCFSHCSSHCSSPARPCPSACAAAGPA 251
P P TRP+ R R A +P P R CFS S ++PAR CPS+C A P
Sbjct: 37 PARPPRTRPSAPGRIRRAAASPPPFPPAPARRRGCFSGDFSASAAPARCCPSSCCARRPR 96
Query: 250 LPPVRLGP--SAPACQHPSIITSRCVPAA---PRRQCWPSRGSSRS 128
PP P +APA + RC PAA P R P R S+RS
Sbjct: 97 SPPFCFPPPAAAPARRAHRPPRCRCAPAAPSPPARAFGPWRSSTRS 142
Score = 32.0 bits (71), Expect = 5.1
Identities = 33/102 (32%), Positives = 43/102 (41%), Gaps = 8/102 (7%)
Frame = -2
Query: 376 WRSRHLAGAPVPRSSHCFSHCSSHCSSPARPCPSA------CAAAGPALPPVRLGP--SA 221
WRS + A P+S + S +P RPC +A AA+G G SA
Sbjct: 136 WRSSTRSSARSPQSPT--AGWRSFAPTPRRPCTAADSGTRRTAASGTRCRGTPSGTRCSA 193
Query: 220 PACQHPSIITSRCVPAAPRRQCWPSRGSSRSQCTGIAAGSRS 95
PA S ++R P +PR SR SSRS A R+
Sbjct: 194 PAPCAASPASARSPPVSPRTARSASRPSSRSASAPSRASPRT 235
>dbj|BAA85164.1| dopamine receptor D4 [Hylobates syndactylus]
Length = 182
Score = 37.0 bits (84), Expect = 0.16
Identities = 25/70 (35%), Positives = 28/70 (39%), Gaps = 14/70 (20%)
Frame = -2
Query: 316 CSSHCSSPAR-----PCPSACAAAGPALPPVRLGPSAPACQHPSIITSR---------CV 179
CS C+SPA PC CA+ PALP GP P C P+ R
Sbjct: 55 CSPDCASPAPALPQGPCSPDCASPAPALPQ---GPYGPHCAPPAPGLPRGPYGPDCAHSA 111
Query: 178 PAAPRRQCWP 149
P PR C P
Sbjct: 112 PGLPRGPCGP 121
Score = 36.2 bits (82), Expect(2) = 2e-05
Identities = 24/74 (32%), Positives = 29/74 (38%), Gaps = 11/74 (14%)
Frame = -2
Query: 355 GAPVPRSSHCFSHCSSHCSSPAR-----PCPSACAAAGPALPPVRLGPSAPACQHPSIIT 191
G P P C C+ PA PC CA+ PALP GP +P C P+
Sbjct: 26 GPPSPTPPTPQDPCGPDCAPPAPGLPQGPCSPDCASPAPALPQ---GPCSPDCASPAPAL 82
Query: 190 SR------CVPAAP 167
+ C P AP
Sbjct: 83 PQGPYGPHCAPPAP 96
Score = 33.9 bits (76), Expect = 1.3
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 270 AQLRGRRSRL-SASAHPHPHASTHQSSPAAVC-PPRPGASAGPAAGPRALSARGLPRGRA 97
A+L GR R S P P T Q C PP PG GP + A A LP+G
Sbjct: 12 AKLHGRAPRRPSGPGPPSPTPPTPQDPCGPDCAPPAPGLPQGPCSPDCASPAPALPQGPC 71
Query: 96 RTACAA 79
CA+
Sbjct: 72 SPDCAS 77
Score = 33.1 bits (74), Expect(2) = 2e-05
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = -3
Query: 177 PPRPGASAGPAAGPRALSARGLPRGRARTACAARCTWPSAPG 52
PP PG GP A SA GLPRG CA P+ PG
Sbjct: 93 PPAPGLPRGPYGPDCAHSAPGLPRGPCGPDCA-----PAVPG 129
>emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 49.3 bits (116), Expect = 3e-05
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 18 QVYIPYACKLLFQELMAMCIAPRM 89
QVYIPYACKLLFQELM+M IAPRM
Sbjct: 1153 QVYIPYACKLLFQELMSMAIAPRM 1176
>emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 49.3 bits (116), Expect = 3e-05
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 18 QVYIPYACKLLFQELMAMCIAPRM 89
QVYIPYACKLLFQELM+M IAPRM
Sbjct: 1153 QVYIPYACKLLFQELMSMAIAPRM 1176
>ref|NP_193902.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana] gi|21542437|sp|P38420|RPB2_ARATH
DNA-directed RNA polymerase II 135 kDa polypeptide (RNA
polymerase II subunit 2) gi|7434761|pir||T05846
DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain - Arabidopsis thaliana
gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase
(EC 2.7.7.6) II second largest chain [Arabidopsis
thaliana] gi|7268968|emb|CAB81278.1| DNA-directed RNA
polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
Length = 1188
Score = 49.3 bits (116), Expect = 3e-05
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 18 QVYIPYACKLLFQELMAMCIAPRM 89
QVYIPYACKLLFQELM+M IAPRM
Sbjct: 1153 QVYIPYACKLLFQELMSMAIAPRM 1176
