KCC002927A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002927A_C01 KCC002927A_c01
ctgcgttgtacatggctccaaacatgagcggcagcgggacccggaatgtgagcggtgctg
acggctgatgttgggtggCTGGGTGGGGCAGGCATGGTCCCCACATGGACAACTGGACTG
GCGTGGCAGCTGGCAGTACCCAGACAACAGGAACAACGACTGGCTCAGTACTACGGATTG
GCTCATTGTAGTAGGAAATTGTAATAGTAGTGTGCCGCATCCTCATGAACTCGAGAGAGT
GAAGTTTTGGTGGATGGTGAGCGAAGGGTTGATGTGTCTAATACACACTTGTACCTGTTG
TTGGGTTGGGTCGCGCGAGTAGAATCCTGGTCCCTGGTTCTCTTAGACGTATGGTGCACC
GCTTTGCACCCGTGTGGCAGAGCATGCATGGATGGAGGTCCACGTAATGGGGGTGCAGCA
GTATGTGCAACGGCTGATGCCACGCGTAAGGTATGGGGCCGCACTGATGGTATGGGTAAG
CTGGGGTAGGAGGCAAGGTGCCAAACGCTTGGCTGTATAGTTTTCCGCGAGTGAATGCGG
TGAACGACGCGTGTTGGTTGCGGGCGAGGTGAGGTGTAGTGTGCGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002927A_C01 KCC002927A_c01
         (588 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_192939.2| disease resistance protein -related [Arabidopsi...    40  0.032
sp|Q9SZ67|WR19_ARATH Probable WRKY transcription factor 19 (WRKY...    40  0.032
ref|NP_775381.1| dystroglycan 1; dystrophin-associated glycoprot...    38  0.12
gb|AAK77899.1|AF397027_1 root nodule extensin [Pisum sativum]          37  0.27
ref|XP_321065.1| ENSANGP00000007859 [Anopheles gambiae] gi|21288...    35  0.60

>ref|NP_192939.2| disease resistance protein -related [Arabidopsis thaliana]
          Length = 1798

 Score = 39.7 bits (91), Expect = 0.032
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +1

Query: 406 NGGAAVCATADATRKVWGRTDGMGKLG*EARCQTLGC 516
           +GG   C   D TR  WGRT+   K G  ARC+T GC
Sbjct: 162 HGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGC 198

>sp|Q9SZ67|WR19_ARATH Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19)
           gi|7484910|pir||T06609 disease resistance protein
           homolog F16J13.90 - Arabidopsis thaliana
           gi|4586107|emb|CAB40943.1| putative disease resistance
           protein [Arabidopsis thaliana]
           gi|7267903|emb|CAB78245.1| putative disease resistance
           protein [Arabidopsis thaliana]
          Length = 1895

 Score = 39.7 bits (91), Expect = 0.032
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +1

Query: 406 NGGAAVCATADATRKVWGRTDGMGKLG*EARCQTLGC 516
           +GG   C   D TR  WGRT+   K G  ARC+T GC
Sbjct: 162 HGGGRRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGC 198

>ref|NP_775381.1| dystroglycan 1; dystrophin-associated glycoprote;
           dystrophin-associated glycoprotein 1 [Danio rerio]
           gi|21902309|gb|AAM78508.1|AF483476_1 dystroglycan [Danio
           rerio]
          Length = 866

 Score = 37.7 bits (86), Expect = 0.12
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
 Frame = -2

Query: 581 HYTSPRPQ-PTRVVHRIHSRKTIQPSVWHLASYPSLPIPSVRPHTLRVASAVAHTAAPPL 405
           H  + +P  P RV  ++++  T  PS+    +YP  PI  V   T    +  + ++APP+
Sbjct: 308 HIANKKPHVPKRVRRQLNNTPTPIPSLLPPTTYPEPPIRIVPTPTSPSIAPTSESSAPPV 367

Query: 404 RGPPSMHALPHGCKAVHHTSKRTRDQDSTRATQPNNRYKCVLDTSTLRSPSTKT 243
           RGP  +   P        T +      ST    P    + ++ TST+    T T
Sbjct: 368 RGPVPLPVKP--------TIRNRDSAPSTPTLGPPLPTRVMVTTSTIAIQPTMT 413

>gb|AAK77899.1|AF397027_1 root nodule extensin [Pisum sativum]
          Length = 195

 Score = 36.6 bits (83), Expect = 0.27
 Identities = 41/154 (26%), Positives = 48/154 (30%), Gaps = 7/154 (4%)
 Frame = -3

Query: 493 PPTPAYPYHQCGPIPYAWHQPLHILLHPHYVDLHPCMLCHTGAKRCTIRLREPGTRILLA 314
           PP P  PYH   P P     P+H   HPH V   P    HT      +    P       
Sbjct: 42  PPPPKDPYHYSSPPP----PPVHTYPHPHPVYHSPPPPVHTYPHPHPV-YHSPPPPTPHK 96

Query: 313 RP-----NPTTGTSVY*THQPFAHHPPKLHSLEFMRMRHTTITISYY--NEPIRSTEPVV 155
           +P      P      Y    P  H PP  H   +         +  Y    P+  + P  
Sbjct: 97  KPYKYPSPPPPPVHTYPHPHPVYHSPPPPHKKPYKYSSPPPPPVHTYPHPHPVYHSPP-- 154

Query: 154 VPVVWVLPAATPVQLSMWGPCLPHPATQHQPSAP 53
            P V   P   PV  S   P  PH      PS P
Sbjct: 155 -PPVHTYPHPHPVYHSPPPPPTPHKKPYKYPSPP 187

>ref|XP_321065.1| ENSANGP00000007859 [Anopheles gambiae] gi|21288952|gb|EAA01245.1|
           ENSANGP00000007859 [Anopheles gambiae str. PEST]
          Length = 666

 Score = 35.4 bits (80), Expect = 0.60
 Identities = 26/84 (30%), Positives = 30/84 (34%), Gaps = 2/84 (2%)
 Frame = -3

Query: 493 PPTPAYPYHQCGPIPYAWHQPLHILLHPHYVDLHPCM--LCHTGAKRCTIRLREPGTRIL 320
           PP    P+HQ  P P   H P H+  HP      P      H G+ R    L   G    
Sbjct: 465 PPNVTVPHHQPPPHPPPHHMPPHMQPHPGMPGHGPSFPGYPHAGSPRAPYYLSSYG---- 520

Query: 319 LARPNPTTGTSVY*THQPFAHHPP 248
              P P      Y  HQ +A  PP
Sbjct: 521 -GHPQPYGQYGHYPYHQQYAPPPP 543



EST assemble image


clone accession position
1 MX204f09_r BP089305 1 462
2 LC049h12_r AV622454 79 588




Chlamydomonas reinhardtii
Kazusa DNA Research Institute