KCC002920A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002920A_C01 KCC002920A_c01
caacgacaaCCCTTCCAAATAGTTACGGGACTTGATGTGCATGGGACGGCTTCTTTGATT
GTCTAGCAAGTTTTCCGGGATCACCTGTGCCATCGCCCGAAAAGGGACAGGCAGCAGATG
ATGACGGTCCGGATGCTTCTTTTGCTCGTGGTGGCCTCTTTGTCGTTGTGCGGAGCTCTC
GCACAGCCGAATGTTGCAGGGCTGTCTGCCCTGCGGCAGCAGAGCCGTGACCGCGTGATC
ACGCTCACGGATGAGGTGCTGTCGGAGTTCATCATGGGGCGCAGCCGCCCGTACTCTGCG
GTTATCTACTATTCGGCACAGCAGGTGTCTGAGGGCAACCCCTCGCTCAAGCTGGACGAG
CTGCGACGCGnagtacgcctacgccgcca


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002920A_C01 KCC002920A_c01
         (389 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK53863.1|AC016781_17 Putative protein with similarity to pu...    42  0.002
ref|XP_139857.1| similar to dJ402N21.2 (novel protein with MAM d...    36  0.15
ref|XP_241623.2| similar to MAM domain containing glycosylphosph...    36  0.15
ref|NP_705691.1| MAM domain containing glycosylphosphatidylinosi...    35  0.25
emb|CAD30702.2| glycosylphosphatidylinositol anchor 1 protein [S...    35  0.33

>gb|AAK53863.1|AC016781_17 Putative protein with similarity to putative prostate cancer tumor
           suppressor [Homo sapiens] [Oryza sativa]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +1

Query: 133 MLLLLVVASLSLCGALAQPNVAGLSALRQQSRDRVITLTDEVLSEFIMGRS-RPYSAVIY 309
           +LLL ++ +     A A   VA L +LR +S   VI LTD  ++ F+   + RPYS +++
Sbjct: 9   LLLLTLLVAAGAASAGADDLVAELQSLRSRSPSGVIHLTDTSITRFLSAPAPRPYSVLVF 68

Query: 310 YSAQQVSEGNPSLKLDELRRXVRL 381
           + A  +      L L +LRR   L
Sbjct: 69  FDAASL-HSKTDLHLPQLRREFAL 91

>ref|XP_139857.1| similar to dJ402N21.2 (novel protein with MAM domain) [Mus
           musculus]
          Length = 1410

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 24/64 (37%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
 Frame = +3

Query: 48  GFFDCLASFPGSPVP--SPEKGQAADDDGPDASFARGGLFVVVRSSRTAECCRAVCPAAA 221
           G + C+ASFPGSPVP  S E   +++   P  S  +G   V VR    AE     C    
Sbjct: 552 GTYLCMASFPGSPVPDLSIEVNISSETVPPTISVPKGRAVVTVREGSPAE---LQCEVRG 608

Query: 222 EP*P 233
           +P P
Sbjct: 609 KPRP 612

>ref|XP_241623.2| similar to MAM domain containing glycosylphosphatidylinositol
           anchor 1; glycosyl-phosphatidyl-inositol-MAM [Rattus
           norvegicus]
          Length = 1149

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 24/64 (37%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
 Frame = +3

Query: 48  GFFDCLASFPGSPVP--SPEKGQAADDDGPDASFARGGLFVVVRSSRTAECCRAVCPAAA 221
           G + C+ASFPGSPVP  S E   +++   P  S  +G   V VR    AE     C    
Sbjct: 560 GTYLCVASFPGSPVPDLSVEVNISSETVPPTISVPKGRAVVTVREGSPAE---LQCEVRG 616

Query: 222 EP*P 233
           +P P
Sbjct: 617 KPRP 620

>ref|NP_705691.1| MAM domain containing glycosylphosphatidylinositol anchor 1;
           glycosyl-phosphatidyl-inositol-MAM [Homo sapiens]
           gi|21744725|gb|AAM77220.1|AF478693_1
           glycosyl-phosphatidyl-inositol-MAM [Homo sapiens]
          Length = 955

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
 Frame = +3

Query: 48  GFFDCLASFPGSPVP--SPEKGQAADDDGPDASFARGGLFVVVRSSRTAECCRAVCPAAA 221
           G + C+ASFPG+PVP  S E   +++   P  S  +G   V VR    AE     C    
Sbjct: 411 GTYLCMASFPGAPVPDLSVEVNISSETVPPTISVPKGRAVVTVREGSPAE---LQCEVRG 467

Query: 222 EP*P 233
           +P P
Sbjct: 468 KPRP 471

>emb|CAD30702.2| glycosylphosphatidylinositol anchor 1 protein [Sus scrofa]
          Length = 885

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
 Frame = +3

Query: 48  GFFDCLASFPGSPVP--SPEKGQAADDDGPDASFARGGLFVVVRSSRTAECCRAVCPAAA 221
           G + C+ASFPG+PVP  S E   +++   P  S  +G   V VR    AE     C    
Sbjct: 341 GTYLCVASFPGAPVPDLSVEVNISSETVPPTISVPKGRAVVTVREGSPAE---LQCEVRG 397

Query: 222 EP*P 233
           +P P
Sbjct: 398 KPRP 401



EST assemble image


clone accession position
1 LCL027e11_r AV627492 1 284
2 LC047d06_r AV622269 10 389




Chlamydomonas reinhardtii
Kazusa DNA Research Institute