KCC002915A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002915A_C01 KCC002915A_c01
agctgctgtgcaagaacccccggtggcggtccgactcgctgacggtagtggaggtgcccg
agggcgtggacagcaacaagATTGTGAAGAACGCATACGCCAAGTACGACCTGTCGCTGG
GCATCGGCCTGGCGTCCATCAACGGCAAGGTGTTCCGCATCGGCCACCTGGGCAACATGA
ACGAGCTGATGCTGGCGGGCGCGCTGGTGGGCGCGGAGATGGCCATGATCGACTCAGGCA
TCAGCATCAAGCCCGGCAGTGGCGTGGCGCGCGCTACCGAGTACTGGCACAAGACGGGGT
CGGTCATCAAGACGCGCGAGAGCCTCCTGAAGTAAACGGTGAAACATAGTGGGCGTGAGC
GTTGTGGCCGACGAGGGGAAGGGCGTTGTCGGGCTGGTAAAGGAGCGGCGACAGTGGACT
TAGTGGGGCGCGTTGAATGCGGCGCAACCCGTTTGCATGGCCCGTCGCTTCGTGACGGGC
TTACGAAGTAGCAGCTAGCTAGAGGCAGAGGGCGCGGCTGCACAGCCGCAGCGTCACTGG
CACGTAGTGGCTACACCGCAAGGAAGTTAAGGGTGTGGATCGTGTTTGTTCGTTAAAGGA
TTGAGAGAAGATTCTTCACAAAAAGCAATAGCATTGGGCATCCGGCTTATTCCTTGTTGC
GTTGTGTCACACAGTAGCAGCTGGCGACAGCGGGGGCAGGCTCGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002915A_C01 KCC002915A_c01
         (707 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD13310.1| serine-glyoxylate aminotransferase [Methylobacte...   121  1e-26
sp|P55819|SGAA_METEX SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT)       121  1e-26
ref|ZP_00048894.1| COG0075: Serine-pyruvate aminotransferase/arc...   118  8e-26
sp|O08374|SGAA_HYPME SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT) ...   113  3e-24
ref|NP_102937.1| probable serine-glyoxylate aminotransferase [Me...   109  5e-23

>emb|CAD13310.1| serine-glyoxylate aminotransferase [Methylobacterium
           dichloromethanicum]
          Length = 379

 Score =  121 bits (303), Expect = 1e-26
 Identities = 52/91 (57%), Positives = 74/91 (81%)
 Frame = +3

Query: 12  KNPRWRSDSLTVVEVPEGVDSNKIVKNAYAKYDLSLGIGLASINGKVFRIGHLGNMNELM 191
           K+P W SD++T +  PEGVD+ KI+K+AY +Y+L+LG GL+ + GKVFRIGH+G++NEL 
Sbjct: 280 KSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELS 339

Query: 192 LAGALVGAEMAMIDSGISIKPGSGVARATEY 284
           L GA+ GAEM++ID+G+ + PGSGVA A+ Y
Sbjct: 340 LLGAIAGAEMSLIDNGVKVTPGSGVAAASSY 370

>sp|P55819|SGAA_METEX SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT)
          Length = 379

 Score =  121 bits (303), Expect = 1e-26
 Identities = 52/91 (57%), Positives = 74/91 (81%)
 Frame = +3

Query: 12  KNPRWRSDSLTVVEVPEGVDSNKIVKNAYAKYDLSLGIGLASINGKVFRIGHLGNMNELM 191
           K+P W SD++T +  PEGVD+ KI+K+AY +Y+L+LG GL+ + GKVFRIGH+G++NEL 
Sbjct: 280 KSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELS 339

Query: 192 LAGALVGAEMAMIDSGISIKPGSGVARATEY 284
           L GA+ GAEM++ID+G+ + PGSGVA A+ Y
Sbjct: 340 LLGAIAGAEMSLIDNGVKVTPGSGVAAASSY 370

>ref|ZP_00048894.1| COG0075: Serine-pyruvate aminotransferase/archaeal aspartate
           aminotransferase [Magnetospirillum magnetotacticum]
          Length = 244

 Score =  118 bits (296), Expect = 8e-26
 Identities = 51/91 (56%), Positives = 74/91 (81%)
 Frame = +3

Query: 12  KNPRWRSDSLTVVEVPEGVDSNKIVKNAYAKYDLSLGIGLASINGKVFRIGHLGNMNELM 191
           K+  W SD++T +  PEGVD+ KI+K+AY +Y+L+LG GL+ + GKVFRIGH+G++NEL 
Sbjct: 145 KSSEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELS 204

Query: 192 LAGALVGAEMAMIDSGISIKPGSGVARATEY 284
           L GA+ GAEM++ID+G+++ PGSGVA A+ Y
Sbjct: 205 LLGAIAGAEMSLIDNGVNVTPGSGVAAASSY 235

>sp|O08374|SGAA_HYPME SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT)
           gi|2081618|dbj|BAA19919.1| serine-glyoxylate
           aminotransferase [Hyphomicrobium methylovorum]
          Length = 405

 Score =  113 bits (283), Expect = 3e-24
 Identities = 51/100 (51%), Positives = 72/100 (72%)
 Frame = +3

Query: 3   LLCKNPRWRSDSLTVVEVPEGVDSNKIVKNAYAKYDLSLGIGLASINGKVFRIGHLGNMN 182
           L  K P+W SD+++ + VPEG+DSN I K AY +Y+ S G+GL  + GKVFRIGHLG ++
Sbjct: 292 LCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLD 351

Query: 183 ELMLAGALVGAEMAMIDSGISIKPGSGVARATEYWHKTGS 302
           E+M+ GAL  AEMA+ D+G+++K GSG   A EY+ K  +
Sbjct: 352 EVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKNAT 391

>ref|NP_102937.1| probable serine-glyoxylate aminotransferase [Mesorhizobium loti]
           gi|14022113|dbj|BAB48723.1| probable serine-glyoxylate
           aminotransferase [Mesorhizobium loti]
          Length = 396

 Score =  109 bits (272), Expect = 5e-23
 Identities = 50/101 (49%), Positives = 71/101 (69%)
 Frame = +3

Query: 3   LLCKNPRWRSDSLTVVEVPEGVDSNKIVKNAYAKYDLSLGIGLASINGKVFRIGHLGNMN 182
           L  K P+W SD+++ ++VPEG+DS  IVK AY  Y  SLG GL  + GKVFRIGHLG +N
Sbjct: 290 LCAKAPKWHSDTVSAIQVPEGIDSGDIVKRAYRTYQTSLGGGLNKVMGKVFRIGHLGWLN 349

Query: 183 ELMLAGALVGAEMAMIDSGISIKPGSGVARATEYWHKTGSV 305
           E+M+  +L  AEMA++D G+ + PGSGV  A +++  + +V
Sbjct: 350 EVMVLASLSAAEMALLDCGVRLAPGSGVGAAIQHFRASAAV 390



EST assemble image


clone accession position
1 LC089f10_r AV625235 1 494
2 LC093a11_r AV625468 101 324
3 LC046a07_r AV622166 161 632
4 LC064g05_r AV623501 164 629
5 LC070g06_r AV623941 191 707




Chlamydomonas reinhardtii
Kazusa DNA Research Institute