KCC002913A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002913A_C01 KCC002913A_c01
attcgtcaaggtgccgctggcggtgtgcatccgcagcgtgcaggcgggcgtgtaccccaa
cgtgtttGCGGCCGCCCGCTCCATCACGTCGGCGGCCGGCCCCCGCGGCCTGTTTACCGG
CTACCTGCCCACGGTGCTGGAGGACGTGCCCGACATGGCCATCAAGTTCGCCGCGTACGA
GAGCATGCGACAGGTGCACCGCGCCATGAACGGCGGTCGGAACGCCAGCGTGCAGGAGGA
CTTCGCCATGGGCGCCATTGCAGGCGCACTGGCTGCTGCTGCGACCACCCCCCTGGACGT
GATCAAGACCAACATGATGTGCAACGCCGCGGGCCGGCCCTCCATGGCCTCGGCTGCGTC
CCTGGTGCTGCAGCAGGGCGGTCCAAAGGCGTTCTTCCGGGGCGTGGGCGCCCGCGCGCT
GAGCAACGGCGTCAACAGCGCCGTGTTCTTTGTGTTCTTTGAGGCCATCCGCGGGGCCAT
CGCCAACCGCGTCAAGAGCCACCCAGTGCAGATTGAGAGTTGAGGGGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002913A_C01 KCC002913A_c01
         (529 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_568060.1| mitochondrial carrier protein family [Arabidops...    96  4e-19
ref|NP_564436.1| mitochondrial carrier protein family [Arabidops...    88  8e-17
dbj|BAC84529.1| mitochondrial aspartate-glutamate carrier protei...    87  1e-16
ref|NP_850252.1| mitochondrial carrier protein family [Arabidops...    84  1e-15
pir||B84773 probable mitochondrial carrier protein [imported] - ...    84  1e-15

>ref|NP_568060.1| mitochondrial carrier protein family [Arabidopsis thaliana]
           gi|15028275|gb|AAK76726.1| putative mitochondrial
           carrier protein [Arabidopsis thaliana]
           gi|19310699|gb|AAL85080.1| putative mitochondrial
           carrier protein [Arabidopsis thaliana]
          Length = 325

 Score = 95.5 bits (236), Expect = 4e-19
 Identities = 55/164 (33%), Positives = 87/164 (52%), Gaps = 2/164 (1%)
 Frame = +2

Query: 5   VKVPLAVCIRSVQAGVYPNVFAAARSITSAAGPRGLFTGYLPTVLEDVPDMAIKFAAYES 184
           ++VP  V  + +Q G + +  +A R I S  G RGL+ GY   +L D+P  AI+F  YE 
Sbjct: 152 IRVPTEVVKQRMQTGQFTSAPSAVRMIASKEGFRGLYAGYRSFLLRDLPFDAIQFCIYEQ 211

Query: 185 MRQVHRAMNGGRNASVQEDFAMGAIAGALAAAATTPLDVIKTNMMCNAAGR--PSMASAA 358
           +   ++     R  S  E+  +GA AGAL  A TTPLDVIKT +M   + +    +    
Sbjct: 212 LCLGYKKA-ARRELSDPENALIGAFAGALTGAVTTPLDVIKTRLMVQGSAKQYQGIVDCV 270

Query: 359 SLVLQQGGPKAFFRGVGARALSNGVNSAVFFVFFEAIRGAIANR 490
             ++++ G  A  +G+G R L  G+  ++FF   E+ +  +A R
Sbjct: 271 QTIVREEGAPALLKGIGPRVLWIGIGGSIFFGVLESTKRTLAQR 314

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 27/122 (22%), Positives = 48/122 (39%)
 Frame = +2

Query: 104 RGLFTGYLPTVLEDVPDMAIKFAAYESMRQVHRAMNGGRNASVQEDFAMGAIAGALAAAA 283
           +GL++G    +   +P  A+    YE  +Q         + S       GAI G  A+  
Sbjct: 94  KGLYSGLAGNIAGVLPASALFVGVYEPTKQ-KLLKTFPDHLSAVAHLTAGAIGGLAASLI 152

Query: 284 TTPLDVIKTNMMCNAAGRPSMASAASLVLQQGGPKAFFRGVGARALSNGVNSAVFFVFFE 463
             P +V+K  M        S  SA  ++  + G +  + G  +  L +    A+ F  +E
Sbjct: 153 RVPTEVVKQRMQTGQF--TSAPSAVRMIASKEGFRGLYAGYRSFLLRDLPFDAIQFCIYE 210

Query: 464 AI 469
            +
Sbjct: 211 QL 212

>ref|NP_564436.1| mitochondrial carrier protein family [Arabidopsis thaliana]
          Length = 327

 Score = 87.8 bits (216), Expect = 8e-17
 Identities = 53/169 (31%), Positives = 90/169 (52%), Gaps = 3/169 (1%)
 Frame = +2

Query: 5   VKVPLAVCIRSVQAGVYPNVFAAARSITSAAGPRGLFTGYLPTVLEDVPDMAIKFAAYES 184
           V+VP  V  + +Q G + +   A R I +  G  G++ GY   +L D+P  A++F  YE 
Sbjct: 158 VRVPTEVVKQRMQTGQFVSAPDAVRLIIAKEGFGGMYAGYGSFLLRDLPFDALQFCVYEQ 217

Query: 185 MRQVHRAMNGGRNASVQEDFAMGAIAGALAAAATTPLDVIKTNMMCNAAGR--PSMASAA 358
           +R +   +   R+ +  E+  +GA AGA+    TTPLDVIKT +M   +G     ++   
Sbjct: 218 LR-IGYKLAARRDLNDPENAMIGAFAGAVTGVLTTPLDVIKTRLMVQGSGTQYKGVSDCI 276

Query: 359 SLVLQQGGPKAFFRGVGARALSNGVNSAVFFVFFEAIRGAIANR-VKSH 502
             ++++ G  A ++G+G R L  G+  ++FF   E  +  ++ R  KSH
Sbjct: 277 KTIIREEGSSALWKGMGPRVLWIGIGGSIFFGVLEKTKQILSERSQKSH 325

 Score = 38.9 bits (89), Expect = 0.041
 Identities = 31/122 (25%), Positives = 54/122 (43%)
 Frame = +2

Query: 107 GLFTGYLPTVLEDVPDMAIKFAAYESMRQVHRAMNGGRNASVQEDFAMGAIAGALAAAAT 286
           GL++G    ++  +P  A+ F  YE  +Q    +    N S     A GA+ GA+++   
Sbjct: 101 GLYSGLGGNLVGVLPASALFFGVYEPTKQKLLKVLPD-NLSAVAHLAAGALGGAVSSIVR 159

Query: 287 TPLDVIKTNMMCNAAGRPSMASAASLVLQQGGPKAFFRGVGARALSNGVNSAVFFVFFEA 466
            P +V+K  M        S   A  L++ + G    + G G+  L +    A+ F  +E 
Sbjct: 160 VPTEVVKQRMQTGQF--VSAPDAVRLIIAKEGFGGMYAGYGSFLLRDLPFDALQFCVYEQ 217

Query: 467 IR 472
           +R
Sbjct: 218 LR 219

>dbj|BAC84529.1| mitochondrial aspartate-glutamate carrier protein-like [Oryza
           sativa (japonica cultivar-group)]
          Length = 284

 Score = 87.4 bits (215), Expect = 1e-16
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 2/164 (1%)
 Frame = +2

Query: 5   VKVPLAVCIRSVQAGVYPNVFAAARSITSAAGPRGLFTGYLPTVLEDVPDMAIKFAAYES 184
           ++VP  V  + +Q   +     A R I    G +GL+ GY   +L D+P  AI+F  YE 
Sbjct: 114 IRVPTEVVKQRMQMSQFKTAPDAVRLIIRKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQ 173

Query: 185 MRQVHRAMNGGRNASVQEDFAMGAIAGALAAAATTPLDVIKTNMMCNAAGRP--SMASAA 358
           +R +   +   R+    E+  +GA AGA+  A TTPLDV+KT +M          + S A
Sbjct: 174 LR-IGYKLAAKRDLKDGENALIGAFAGAITGAITTPLDVLKTRLMVQGQANQYRGIISCA 232

Query: 359 SLVLQQGGPKAFFRGVGARALSNGVNSAVFFVFFEAIRGAIANR 490
             +L++ G  AF +G+  R L  G+  ++FF   E  +  +A R
Sbjct: 233 QTILREEGAGAFLKGIEPRVLWIGIGGSIFFGVLEKTKSILAER 276

 Score = 40.8 bits (94), Expect = 0.011
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
 Frame = +2

Query: 38  VQAGVYPNVFAAARSITSAAGPR----GLFTGYLPTVLEDVPDMAIKFAAYESMRQVHRA 205
           V+  +YP      R   +  G +    GL+ G    +   +P  AI    YE  ++    
Sbjct: 30  VETALYPIDTIKTRLQAAKGGSKIQWKGLYAGLGGNIAGVLPASAIFIGVYEPTKRKLLE 89

Query: 206 MNGGRNASVQEDFAMGAIAGALAAAATTPLDVIKTNMMCNAAGRPSMASAASLVLQQGGP 385
           M    N S       GAI GA ++    P +V+K  M  +     +   A  L++++ G 
Sbjct: 90  MFP-ENLSAVAHLTAGAIGGAASSLIRVPTEVVKQRMQMSQF--KTAPDAVRLIIRKEGF 146

Query: 386 KAFFRGVGARALSNGVNSAVFFVFFEAIR 472
           K  + G G+  L +    A+ F  +E +R
Sbjct: 147 KGLYAGYGSFLLRDLPFDAIQFCIYEQLR 175

>ref|NP_850252.1| mitochondrial carrier protein family [Arabidopsis thaliana]
            gi|17380984|gb|AAL36304.1| putative mitochondrial carrier
            protein [Arabidopsis thaliana] gi|20466023|gb|AAM20346.1|
            putative mitochondrial carrier protein [Arabidopsis
            thaliana]
          Length = 823

 Score = 83.6 bits (205), Expect = 1e-15
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
 Frame = +2

Query: 5    VKVPLAVCIRSVQAGVYPNVFAAARSITSAAGPRGLFTGYLPTVLEDVPDMAIKFAAY-E 181
            V++P  V  + +QAG++ NV  A        GP G F G   T+  +VP   +    Y E
Sbjct: 647  VRIPCEVLKQRLQAGMFNNVGEAIVGTWKQDGPSGFFRGTGATLCREVPLYVVGMGLYAE 706

Query: 182  SMRQVHRAMNGGRNASVQEDFAMGAIAGALAAAATTPLDVIKTNMMCNAAGRP-SMASAA 358
            S + V +A+  GR     E  A+GA++G +AA  TTP DV+KT MM    GRP SM+   
Sbjct: 707  SKKMVAQAL--GRELEAWETIAVGAVSGGIAAVVTTPFDVMKTRMMTATPGRPISMSMVV 764

Query: 359  SLVLQQGGPKAFFRGVGARALSNGVNSAVFFVFFEAIRGAI 481
              +L+  GP   F+G   R        A+ F  +E  + A+
Sbjct: 765  VSILRNEGPLGLFKGAVPRFFWVAPLGAMNFAGYELAKKAM 805

>pir||B84773 probable mitochondrial carrier protein [imported] - Arabidopsis
            thaliana gi|4510389|gb|AAD21477.1| putative mitochondrial
            carrier protein [Arabidopsis thaliana]
          Length = 844

 Score = 83.6 bits (205), Expect = 1e-15
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
 Frame = +2

Query: 5    VKVPLAVCIRSVQAGVYPNVFAAARSITSAAGPRGLFTGYLPTVLEDVPDMAIKFAAY-E 181
            V++P  V  + +QAG++ NV  A        GP G F G   T+  +VP   +    Y E
Sbjct: 668  VRIPCEVLKQRLQAGMFNNVGEAIVGTWKQDGPSGFFRGTGATLCREVPLYVVGMGLYAE 727

Query: 182  SMRQVHRAMNGGRNASVQEDFAMGAIAGALAAAATTPLDVIKTNMMCNAAGRP-SMASAA 358
            S + V +A+  GR     E  A+GA++G +AA  TTP DV+KT MM    GRP SM+   
Sbjct: 728  SKKMVAQAL--GRELEAWETIAVGAVSGGIAAVVTTPFDVMKTRMMTATPGRPISMSMVV 785

Query: 359  SLVLQQGGPKAFFRGVGARALSNGVNSAVFFVFFEAIRGAI 481
              +L+  GP   F+G   R        A+ F  +E  + A+
Sbjct: 786  VSILRNEGPLGLFKGAVPRFFWVAPLGAMNFAGYELAKKAM 826



EST assemble image


clone accession position
1 LC044a08_r AV622102 1 509
2 LCL067f08_r AV629853 68 529




Chlamydomonas reinhardtii
Kazusa DNA Research Institute