KCC002911A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002911A_C01 KCC002911A_c01
tgcggcaAGAAGGCGGGCTGGCTCAAGGAGGCCGCCGGGCCCAAGGTGTCACACGTGGGC
TTCGGCCTGGTGCTGGGCGAGGACGGCAAGCGCTTCCGCACCCGCTCCGGCGACCTGGTG
CGCCTGGTGGAGCTGCTGGATGAGGCCAAGAGCCGCTGCGCCGCGACTATCCGCGAGCGC
CGGCAGGAGGCGGGCGAGGAGATCGTGGAGGCGGAGGTGGAGGAGGCGGCGTGCGCCATG
GGCTACGGCGCCGTCAAGTACGCGGACCTGAAGAACCACCGCACCACCAACTACAAGTTC
TCCTTCGACGACATGCTCAACCTCAAGGGCAACACCGCCGTGTACCTGCTGTACGCGCAC
GCGCGCATTGCGGGTATCGTGCGCAAGGGCGGCAAGGACGTGTACGCGCTGGCCGCCTCC
ACGCCCGTGACGCTGGAGCACCCCAAGGAGCTGGAGCTGGCGCTGCACCTGAGCAAAATG
CCCGATGCGCTGGAGGACGCCATTGAGGAGCTGGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002911A_C01 KCC002911A_c01
         (517 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana]        187  7e-47
ref|NP_194360.1| arginyl-tRNA synthetase [Arabidopsis thaliana] ...   187  7e-47
dbj|BAA96752.1| unnamed protein product [Oryza sativa (japonica ...   177  7e-44
emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana]        175  4e-43
ref|NP_176826.1| arginyl-tRNA synthetase [Arabidopsis thaliana] ...   175  4e-43

>emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 590

 Score =  187 bits (475), Expect = 7e-47
 Identities = 98/171 (57%), Positives = 124/171 (72%), Gaps = 2/171 (1%)
 Frame = +1

Query: 7   KKAGWL--KEAAGPKVSHVGFGLVLGEDGKRFRTRSGDLVRLVELLDEAKSRCAATIRER 180
           +KAGWL   +   P+V+HVGFGLVLGEDGKRFRTR+ D+VRLV+LLDEAK+R    + ER
Sbjct: 362 RKAGWLPDNDKTYPRVNHVGFGLVLGEDGKRFRTRATDVVRLVDLLDEAKTRSKLALIER 421

Query: 181 RQEAGEEIVEAEVEEAACAMGYGAVKYADLKNHRTTNYKFSFDDMLNLKGNTAVYLLYAH 360
            ++  +E    E+++ A A+GYGAVKYADLKN+R TNY FSFD MLN KGNTAVYLLYAH
Sbjct: 422 GKD--KEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 479

Query: 361 ARIAGIVRKGGKDVYALAASTPVTLEHPKELELALHLSKMPDALEDAIEEL 513
           ARI  I+RK GKD+  L  +  + L+H  E  L LHL +  + +E+A   L
Sbjct: 480 ARICSIIRKSGKDIDELKKTGKLALDHADERALGLHLLRFAETVEEACTNL 530

>ref|NP_194360.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
           gi|7437759|pir||T06014 arginine-tRNA ligase (EC
           6.1.1.19) - Arabidopsis thaliana
           gi|2632105|emb|CAB11468.1| arginyl-tRNA synthetase
           [Arabidopsis thaliana] gi|4539426|emb|CAB38959.1|
           arginyl-tRNA synthetase [Arabidopsis thaliana]
           gi|7269482|emb|CAB79485.1| arginyl-tRNA synthetase
           [Arabidopsis thaliana]
          Length = 642

 Score =  187 bits (475), Expect = 7e-47
 Identities = 98/171 (57%), Positives = 124/171 (72%), Gaps = 2/171 (1%)
 Frame = +1

Query: 7   KKAGWL--KEAAGPKVSHVGFGLVLGEDGKRFRTRSGDLVRLVELLDEAKSRCAATIRER 180
           +KAGWL   +   P+V+HVGFGLVLGEDGKRFRTR+ D+VRLV+LLDEAK+R    + ER
Sbjct: 414 RKAGWLPDNDKTYPRVNHVGFGLVLGEDGKRFRTRATDVVRLVDLLDEAKTRSKLALIER 473

Query: 181 RQEAGEEIVEAEVEEAACAMGYGAVKYADLKNHRTTNYKFSFDDMLNLKGNTAVYLLYAH 360
            ++  +E    E+++ A A+GYGAVKYADLKN+R TNY FSFD MLN KGNTAVYLLYAH
Sbjct: 474 GKD--KEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 531

Query: 361 ARIAGIVRKGGKDVYALAASTPVTLEHPKELELALHLSKMPDALEDAIEEL 513
           ARI  I+RK GKD+  L  +  + L+H  E  L LHL +  + +E+A   L
Sbjct: 532 ARICSIIRKSGKDIDELKKTGKLALDHADERALGLHLLRFAETVEEACTNL 582

>dbj|BAA96752.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|9757672|dbj|BAB08191.1| Similar to Arabidopsis
           thaliana arginine--tRNA ligase (T06014) [Oryza sativa
           (japonica cultivar-group)]
          Length = 605

 Score =  177 bits (449), Expect = 7e-44
 Identities = 96/174 (55%), Positives = 120/174 (68%), Gaps = 5/174 (2%)
 Frame = +1

Query: 7   KKAGWLKEAAG---PKVSHVGFGLVLGEDGKRFRTRSGDLVRLVELLDEAKSRCAATIRE 177
           K AGWL E  G   PK SHVGFGLVLG DGKRFRTR  ++VRLV+LLDEAK+R  A + +
Sbjct: 372 KMAGWLPEQNGKKYPKASHVGFGLVLGSDGKRFRTRCSEVVRLVDLLDEAKARSKAQLIK 431

Query: 178 RRQEAGE--EIVEAEVEEAACAMGYGAVKYADLKNHRTTNYKFSFDDMLNLKGNTAVYLL 351
           R    G+  +  + E++  + A+GYGAVKY+DLKN+R T+Y FSFD ML+ KGNTAVYL 
Sbjct: 432 RFTGNGQIADWTDDELDRTSEAIGYGAVKYSDLKNNRLTDYTFSFDQMLSDKGNTAVYLQ 491

Query: 352 YAHARIAGIVRKGGKDVYALAASTPVTLEHPKELELALHLSKMPDALEDAIEEL 513
           YAHARI  I+RK  KDV  L  +  +TL HP E  L LHL +  + +E A  +L
Sbjct: 492 YAHARICSIIRKASKDVEKLKMTGAITLGHPYERFLGLHLIQFTEVVEQACADL 545

>emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 589

 Score =  175 bits (443), Expect = 4e-43
 Identities = 92/171 (53%), Positives = 120/171 (69%), Gaps = 2/171 (1%)
 Frame = +1

Query: 7   KKAGWLKE--AAGPKVSHVGFGLVLGEDGKRFRTRSGDLVRLVELLDEAKSRCAATIRER 180
           +KAGWL +     P+VSHVGFGLVLG+D KRFRTR+ ++VRL +LLDEAK R  A + ER
Sbjct: 362 RKAGWLPDDDKTYPRVSHVGFGLVLGDDNKRFRTRAAEVVRLADLLDEAKDRSKAALIER 421

Query: 181 RQEAGEEIVEAEVEEAACAMGYGAVKYADLKNHRTTNYKFSFDDMLNLKGNTAVYLLYAH 360
            ++  +E    E+++ A A+GYGA+KYADLK +R T Y FSFD MLN KG+TAVYLLYAH
Sbjct: 422 GKD--KEWSPEELDQIAEAVGYGALKYADLKTNRITGYTFSFDQMLNDKGDTAVYLLYAH 479

Query: 361 ARIAGIVRKGGKDVYALAASTPVTLEHPKELELALHLSKMPDALEDAIEEL 513
           ARI  I+RK GKD+  L  +  + L+H  E  L LHL +  + +E+A   L
Sbjct: 480 ARICSIIRKSGKDIDELKKTGKIALDHAAERALGLHLLQFAETVEEACTTL 530

>ref|NP_176826.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
           gi|25293281|pir||A96691 arginyl-tRNA synthetase
           [imported] - Arabidopsis thaliana
           gi|12322268|gb|AAG51163.1|AC074025_13 arginyl-tRNA
           synthetase [Arabidopsis thaliana]
           gi|14030685|gb|AAK53017.1|AF375433_1 At1g66530/F28G11_14
           [Arabidopsis thaliana] gi|20334712|gb|AAM16217.1|
           At1g66530/F28G11_14 [Arabidopsis thaliana]
          Length = 590

 Score =  175 bits (443), Expect = 4e-43
 Identities = 92/171 (53%), Positives = 120/171 (69%), Gaps = 2/171 (1%)
 Frame = +1

Query: 7   KKAGWLKE--AAGPKVSHVGFGLVLGEDGKRFRTRSGDLVRLVELLDEAKSRCAATIRER 180
           +KAGWL +     P+VSHVGFGLVLG+D KRFRTR+ ++VRL +LLDEAK R  A + ER
Sbjct: 362 RKAGWLPDDDKTYPRVSHVGFGLVLGDDNKRFRTRAAEVVRLADLLDEAKDRSKAALIER 421

Query: 181 RQEAGEEIVEAEVEEAACAMGYGAVKYADLKNHRTTNYKFSFDDMLNLKGNTAVYLLYAH 360
            ++  +E    E+++ A A+GYGA+KYADLK +R T Y FSFD MLN KG+TAVYLLYAH
Sbjct: 422 GKD--KEWSPEELDQIAEAVGYGALKYADLKTNRITGYTFSFDQMLNDKGDTAVYLLYAH 479

Query: 361 ARIAGIVRKGGKDVYALAASTPVTLEHPKELELALHLSKMPDALEDAIEEL 513
           ARI  I+RK GKD+  L  +  + L+H  E  L LHL +  + +E+A   L
Sbjct: 480 ARICSIIRKSGKDIDELKKTGKIALDHAAERALGLHLLQFAETVEEACTTL 530



EST assemble image


clone accession position
1 LC058h01_r AV623094 1 472
2 LC058h02_r AV623095 8 504
3 LC043g09_r AV622094 50 517




Chlamydomonas reinhardtii
Kazusa DNA Research Institute