KCC002910A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002910A_C01 KCC002910A_c01
ttgcataaACGTGATCCATACGTGTCCTGTCACTAGCCATTGCAAGCGCAAATCCTAAGT
TGGCTCGAGGTGACATACAACCATTTGAACTTGCGGCCAGAGCCACCCACCTACACTCAC
CGGCTGAGCTGCTAAGCATTTAGCCATCTCTCTTTGGCGCTTAAATACTGACAGCTGCGA
GCATGGAGGCGTTGAGGTGCCAGTCGCGAGTCCTCGGCGCTGGCCACGCAGCTGCCACCG
CCTCCGCAGTTCGCCGACCAGCGCTTTCTCTGGTATCGCATTCAGTAAGGACACCAGTCC
AGCGGCAAGCGGCGTACTATGAGACCGACCTGCCCCTCGCCAACATCGCCAAGGCTACGC
GCACAGTGCCAAAGGCCCCGAAGCCGACCGGCAACGCGGTCAACGACCTGGTGACGAAGC
TGCAGCTGTGCTTTAAAATCTTCTTTCCTGATGAGGAGCCTAAGGTCAATGTGACGCCCA
AGGAGGAGGTCAAGCGGCGATTGAAAATGGTTCTGGTGGCGGACCGCTGCGGCATGAGCC
CCAACTCTCTTGGCGAGCTCAAGCGGACCATTGCGCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002910A_C01 KCC002910A_c01
         (579 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ19801.1| MinE [Chlamydomonas reinhardtii]                       259  2e-68
emb|CAB42593.1| putative MINE protein [Auxenochlorella protothec...    67  2e-10
ref|ZP_00005429.1| COG0582: Integrase [Rhodobacter sphaeroides]        37  0.20
dbj|BAB93192.1| P0031D02.21 [Oryza sativa (japonica cultivar-gro...    36  0.34
gb|AAC00002.1| erythroid differentiation-related factor 2 [Homo ...    35  0.58

>gb|AAQ19801.1| MinE [Chlamydomonas reinhardtii]
          Length = 177

 Score =  259 bits (662), Expect = 2e-68
 Identities = 131/132 (99%), Positives = 132/132 (99%)
 Frame = +3

Query: 183 MEALRCQSRVLGAGHAAATASAVRRPALSLVSHSVRTPVQRQAAYYETDLPLANIAKATR 362
           MEALRCQSRVLGAGHAAATASAVRRPALSLVSHSVRTPVQRQAAYYETDLPLANIAKATR
Sbjct: 1   MEALRCQSRVLGAGHAAATASAVRRPALSLVSHSVRTPVQRQAAYYETDLPLANIAKATR 60

Query: 363 TVPKAPKPTGNAVNDLVTKLQLCFKIFFPDEEPKVNVTPKEEVKRRLKMVLVADRCGMSP 542
           TVPKAPKPTGNAVNDLVTKLQLCFKIFFPDEEPKVNVTPKEEV+RRLKMVLVADRCGMSP
Sbjct: 61  TVPKAPKPTGNAVNDLVTKLQLCFKIFFPDEEPKVNVTPKEEVERRLKMVLVADRCGMSP 120

Query: 543 NSLGELKRTIAR 578
           NSLGELKRTIAR
Sbjct: 121 NSLGELKRTIAR 132

>emb|CAB42593.1| putative MINE protein [Auxenochlorella protothecoides]
          Length = 198

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 36/85 (42%), Positives = 56/85 (65%)
 Frame = +3

Query: 324 TDLPLANIAKATRTVPKAPKPTGNAVNDLVTKLQLCFKIFFPDEEPKVNVTPKEEVKRRL 503
           +D  LA++  A   VP+AP   G      V KL+  ++IFFP++ P +  TPK+E K RL
Sbjct: 47  SDAHLAHLRNAGHPVPEAPGLQG-----FVAKLKAAWQIFFPEKPPVL--TPKDEGKNRL 99

Query: 504 KMVLVADRCGMSPNSLGELKRTIAR 578
           +M+LVADRCG++P+SL  ++ +I +
Sbjct: 100 RMILVADRCGITPDSLTGMRESIVQ 124

>ref|ZP_00005429.1| COG0582: Integrase [Rhodobacter sphaeroides]
          Length = 439

 Score = 37.0 bits (84), Expect = 0.20
 Identities = 26/79 (32%), Positives = 38/79 (47%), Gaps = 3/79 (3%)
 Frame = -1

Query: 330 GRSHSTPLAAGLVSLLNAIPEKALVGELRRRWQLRGQRRGLATGTSTPPCSQLSVFKRQR 151
           GR H  PL+   V+LL  +P  A  G+L       G R G+ +  S       +V +R +
Sbjct: 288 GREHRVPLSGPAVALLRGLPRLAGTGDL----IFPGPRGGILSDMSVS-----AVMRRMQ 338

Query: 150 EMAKC---LAAQPVSVGGW 103
           E A+    +A +PVS  GW
Sbjct: 339 EDAETEAKMAGRPVSAAGW 357

>dbj|BAB93192.1| P0031D02.21 [Oryza sativa (japonica cultivar-group)]
          Length = 204

 Score = 36.2 bits (82), Expect = 0.34
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +2

Query: 455 GA*GQCDAQGGGQAAIE-----NGSGGGP-LRHEPQLSWR 556
           G  G C  +GGG  + +     +GSGGGP +RH P+ SWR
Sbjct: 98  GGTGSCGGEGGGGGSDDREGCADGSGGGPTVRHRPRSSWR 137

>gb|AAC00002.1| erythroid differentiation-related factor 2 [Homo sapiens]
          Length = 107

 Score = 35.4 bits (80), Expect = 0.58
 Identities = 15/38 (39%), Positives = 24/38 (62%)
 Frame = -2

Query: 401 DRVAGRLRGLWHCARSLGDVGEGQVGLIVRRLPLDWCP 288
           +R+ G++ GLW CA +LG++  G +G  V+   LD  P
Sbjct: 46  ERMRGQMMGLWFCASALGNLAAGLIGGHVKADQLDMLP 83



EST assemble image


clone accession position
1 LC047g09_r AV622092 1 521
2 LC087b04_r AV625047 9 489
3 MX026g06_r BP087149 10 446
4 LC070a06_r AV623883 23 467
5 LC099g08_r AV625915 31 216
6 LC058c06_r AV623052 48 580




Chlamydomonas reinhardtii
Kazusa DNA Research Institute