Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002909A_C01 KCC002909A_c01
(511 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_294211.3| similar to ataxin 2 related protein isoform D; ... 33 2.7
gb|AAL34128.1|AC090713_15 putative peroxidase [Oryza sativa (jap... 32 4.6
dbj|BAC16194.1| putative peroxidase [Oryza sativa (japonica cult... 31 7.9
>ref|XP_294211.3| similar to ataxin 2 related protein isoform D; ataxin-2 domain
protein [Homo sapiens]
Length = 1032
Score = 32.7 bits (73), Expect = 2.7
Identities = 29/96 (30%), Positives = 41/96 (42%)
Frame = +2
Query: 209 YPYPLRNTLVPHSVQSLPNDL**HLPVWSAFGYLSVVVLCRHQRASTNPCVSAYPLIPSH 388
YPYP+ N++ + W A G L + +HQ AS P V+A S
Sbjct: 707 YPYPVSNSVSGQQGK-----------YWGAKGSLLPQLWDQHQPASAPPTVAA----GSP 751
Query: 389 LCASFPPASYSEQNTRLLPLS*PQQKLTAIWPPCPV 496
L A+ P +SY N + LP + A +P PV
Sbjct: 752 LVAATPYSSYIPYNPQQLPGPPAMMQPMAHYPSXPV 787
>gb|AAL34128.1|AC090713_15 putative peroxidase [Oryza sativa (japonica cultivar-group)]
Length = 324
Score = 32.0 bits (71), Expect = 4.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 344 WHVDAGIALQLTNNRTQTTRAGVTTGH*VGFAHCG 240
+++D +L NN +QT ++ H VGFAHCG
Sbjct: 169 FNLDQLTSLFAANNLSQTDMIALSAAHTVGFAHCG 203
>dbj|BAC16194.1| putative peroxidase [Oryza sativa (japonica cultivar-group)]
Length = 330
Score = 31.2 bits (69), Expect = 7.9
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 344 WHVDAGIALQLTNNRTQTTRAGVTTGH*VGFAHCGGQVCYARGTGRL*LITKSVEPLMGS 165
+++D AL N +Q ++ GH VGFAHC + RG+ SV+P M
Sbjct: 176 FNLDQLTALFAANGLSQADMIALSAGHTVGFAHCNTFLGRIRGS--------SVDPTMSP 227
Query: 164 KRQA 153
+ A
Sbjct: 228 RYAA 231
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,216,597
Number of Sequences: 1537769
Number of extensions: 11188190
Number of successful extensions: 41305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41295
length of database: 498,525,298
effective HSP length: 115
effective length of database: 321,681,863
effective search space used: 17370820602
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)