KCC002909A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002909A_C01 KCC002909A_c01
AACATAGCGGGTCCTTACACGTCCCTCCGTTTCCAGCCGCTCATATACTGCATCAGCGCA
TCCTCAGCGCATGAACACGCGCACGCTCTGTAACATCCACGCAAATCTCAGTCGGACTGC
GGTATCCCCAAAACTGCTTATGCACGTGTCTACGCCTGGCGCTTGGAGCCCATTAATGGT
TCAACGCTCTTGGTGATCAGCTACAGCCTACCCGTACCCCTTGCGTAACACACTTGTCCC
CCACAGTGTGCAAAGCCTACCTAATGACCTGTAGTAACACCTGCCCGTGTGGTCTGCGTT
CGGTTATTTGTCAGTTGTAGTGCTATGCCGGCATCAACGTGCCAGCACTAACCCCTGCGT
CAGTGCCTACCCGCTAATCCCCTCGCACCTCTGCGCATCATTTCCTCCAGCTTCATATAG
TGAACAGAACACACGTCTGCTACCGCTATCATAACCCCAGCAAAAGCTTACAGCTATCTG
GCCGCCGTGCCCTGTGCGTAGAGCTAGACCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002909A_C01 KCC002909A_c01
         (511 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_294211.3| similar to ataxin 2 related protein isoform D; ...    33  2.7
gb|AAL34128.1|AC090713_15 putative peroxidase [Oryza sativa (jap...    32  4.6
dbj|BAC16194.1| putative peroxidase [Oryza sativa (japonica cult...    31  7.9

>ref|XP_294211.3| similar to ataxin 2 related protein isoform D; ataxin-2 domain
           protein [Homo sapiens]
          Length = 1032

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 29/96 (30%), Positives = 41/96 (42%)
 Frame = +2

Query: 209 YPYPLRNTLVPHSVQSLPNDL**HLPVWSAFGYLSVVVLCRHQRASTNPCVSAYPLIPSH 388
           YPYP+ N++     +            W A G L   +  +HQ AS  P V+A     S 
Sbjct: 707 YPYPVSNSVSGQQGK-----------YWGAKGSLLPQLWDQHQPASAPPTVAA----GSP 751

Query: 389 LCASFPPASYSEQNTRLLPLS*PQQKLTAIWPPCPV 496
           L A+ P +SY   N + LP      +  A +P  PV
Sbjct: 752 LVAATPYSSYIPYNPQQLPGPPAMMQPMAHYPSXPV 787

>gb|AAL34128.1|AC090713_15 putative peroxidase [Oryza sativa (japonica cultivar-group)]
          Length = 324

 Score = 32.0 bits (71), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 344 WHVDAGIALQLTNNRTQTTRAGVTTGH*VGFAHCG 240
           +++D   +L   NN +QT    ++  H VGFAHCG
Sbjct: 169 FNLDQLTSLFAANNLSQTDMIALSAAHTVGFAHCG 203

>dbj|BAC16194.1| putative peroxidase [Oryza sativa (japonica cultivar-group)]
          Length = 330

 Score = 31.2 bits (69), Expect = 7.9
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -3

Query: 344 WHVDAGIALQLTNNRTQTTRAGVTTGH*VGFAHCGGQVCYARGTGRL*LITKSVEPLMGS 165
           +++D   AL   N  +Q     ++ GH VGFAHC   +   RG+        SV+P M  
Sbjct: 176 FNLDQLTALFAANGLSQADMIALSAGHTVGFAHCNTFLGRIRGS--------SVDPTMSP 227

Query: 164 KRQA 153
           +  A
Sbjct: 228 RYAA 231

  Database: nr
    Posted date:  Oct 14, 2003 12:26 AM
  Number of letters in database: 498,525,298
  Number of sequences in database:  1,537,769
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,216,597
Number of Sequences: 1537769
Number of extensions: 11188190
Number of successful extensions: 41305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41295
length of database: 498,525,298
effective HSP length: 115
effective length of database: 321,681,863
effective search space used: 17370820602
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 LC068e11_r AV623783 1 616
2 LC047f09_r AV622080 72 491




Chlamydomonas reinhardtii
Kazusa DNA Research Institute