KCC002907A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002907A_C01 KCC002907A_c01
ttcctgtggaacatggagaagcgcaaccggctgtgtgagctggagagcagcatgcacgtc
agcaaggccgagctcgcgccGGCCCGTGCCGCACCGGCGCCGGCCCCCGCCTCGCCAGCG
CCGTCGTTCGTGCCGGGCATGGCGCCTGCGTTTGCCTAATGCTCCGACACCCTGTTTGCG
CTTCACGTAAGAGGCCAGCTGTGAAGTGGAGATCATGCCATCAAGTGCGGTATTTTGAGT
GTGAAAGGGAGCGACATATTTTTGCGGCCAGACCGGCGGCCGTGTGTACAGTATGGATGA
ATACCCCTGGGTGCCCTGTGTTTTTGTATTGTGTAGGGGCAGTACCCGAACCAAGCTGGC
AGCGAGAGTGAATCTTTTGTGGGAGGGTCGTGAGTAAATGCGCGCATGCGCGGGGAGAGG
GTTACGGCGTTGAGGCACGCGCGAGGCGTTGGAGCCTCGGGCCACTGAGAGTTGTATTTT
TTGTTTGGGCTTCTCGTGCAGGGCGTGCTGCGTGAATTGAACTGCGCGGGGCTTTGTTGT
GGGACCATGCGGAACGTTCTGGGTGCAGTTGGCATTTTTGTTTGATTCTACAGGGCAGCA
TTCGGTTGTTATACGGTAGTACCGCTACTGGCGCTACGGTCTCGGCGTGCCGGTCCAGCC
GCCAGCACGGACAGGCACGGAGCAGGTGAGACCGAAGGGGTTTGCGGGCATTGCTTACGC
CAGCCGTGATAGCCGTACGTGATAGCGATACGAGTTCATTCCATTGTTGGTCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002907A_C01 KCC002907A_c01
         (773 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK73104.1|AF391808_2 MAP kinase kinase [Zea mays]                  42  0.014
dbj|BAC98716.1| hypothetical protein [Oryza sativa (japonica cul...    41  0.024
ref|XP_290770.2| KIAA1447 protein [Homo sapiens]                       39  0.071
sp|Q59098|ODP2_ALCEU Dihydrolipoamide acetyltransferase componen...    39  0.093
ref|NP_827199.1| putative dihydrolipoamide S-succinyltransferase...    37  0.35

>gb|AAK73104.1|AF391808_2 MAP kinase kinase [Zea mays]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.014
 Identities = 23/68 (33%), Positives = 33/68 (47%)
 Frame = -1

Query: 563 PRTFRMVPQQSPAQFNSRSTPCTRSPNKKYNSQWPEAPTPRACLNAVTLSPRMRAFTHDP 384
           PR   ++P  +PAQ + R+TPC R+ ++      P +P  RA   A  +SP        P
Sbjct: 39  PRPNELLPTPTPAQSDPRTTPCARAASR------PSSPARRAARAAARISPSPCPSARSP 92

Query: 383 PTKDSLSL 360
           P   S SL
Sbjct: 93  PPSPSRSL 100

>dbj|BAC98716.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 106

 Score = 40.8 bits (94), Expect = 0.024
 Identities = 17/29 (58%), Positives = 21/29 (71%)
 Frame = -3

Query: 147 RRHARHERRRWRGGGRRRCGTGRRELGLA 61
           R   R + RRW+GG RRRCG+GRRE  +A
Sbjct: 71  RHLLRRQIRRWKGGSRRRCGSGRREESVA 99

>ref|XP_290770.2| KIAA1447 protein [Homo sapiens]
          Length = 174

 Score = 39.3 bits (90), Expect = 0.071
 Identities = 20/44 (45%), Positives = 22/44 (49%)
 Frame = +2

Query: 41  WRAACTSARPSSRRPVPHRRRPPPRQRRRSCRAWRLRLPNAPTP 172
           WR A T AR SSR P       P R R R+ R WR   P A +P
Sbjct: 24  WRCASTRARQSSRCPTTATATAPSRTRTRTGRGWRPACPPASSP 67

>sp|Q59098|ODP2_ALCEU Dihydrolipoamide acetyltransferase component of pyruvate
           dehydrogenase complex (E2) gi|1073213|pir||B55514
           dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) -
           Alcaligenes eutrophus gi|497265|gb|AAA21599.1|
           dihydrolipoamide acetyltransferase
          Length = 553

 Score = 38.9 bits (89), Expect = 0.093
 Identities = 23/49 (46%), Positives = 31/49 (62%)
 Frame = +1

Query: 10  NMEKRNRLCELESSMHVSKAELAPARAAPAPAPASPAPSFVPGMAPAFA 156
           N+ + + L  LE++   + A  APA AAPAPA A+PAP+  P  APA A
Sbjct: 67  NVSEGSVLVMLEAANEPAAAP-APAAAAPAPAAAAPAPAPAPAAAPAAA 114

 Score = 33.1 bits (74), Expect = 5.1
 Identities = 18/28 (64%), Positives = 19/28 (67%)
 Frame = +1

Query: 67  AELAPARAAPAPAPASPAPSFVPGMAPA 150
           A  APA AA APAPA PAP+  P  APA
Sbjct: 90  AAAAPAPAAAAPAPA-PAPAAAPAAAPA 116

>ref|NP_827199.1| putative dihydrolipoamide S-succinyltransferase [Streptomyces
           avermitilis MA-4680] gi|29609685|dbj|BAC73734.1|
           putative dihydrolipoamide S-succinyltransferase
           [Streptomyces avermitilis MA-4680]
          Length = 607

 Score = 37.0 bits (84), Expect = 0.35
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +1

Query: 67  AELAPARAAPAPAPASPAPSFVPGMAPA 150
           A  APA AAPAPAPA+PAP+     APA
Sbjct: 238 APAAPAPAAPAPAPAAPAPAQAAPAAPA 265

 Score = 33.1 bits (74), Expect = 5.1
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +1

Query: 76  APARAAPAPAPASPAPSFVPGMAPA 150
           A A AAPAPAPA+PAP+  P  APA
Sbjct: 229 AAAPAAPAPAPAAPAPA-APAPAPA 252

 Score = 32.7 bits (73), Expect = 6.6
 Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
 Frame = +1

Query: 67  AELAPARAAPAP----APASPAPSFV-PGMAPA 150
           A  APA+AAPAP    APA+PAP+ V P  APA
Sbjct: 263 APAAPAQAAPAPAAPQAPAAPAPAPVTPAAAPA 295



EST assemble image


clone accession position
1 LC057b01_r AV622961 1 555
2 MX254e07_r BP092461 143 700
3 LC043g01_r AV621999 248 773
4 MX260c05_r BP092872 248 690




Chlamydomonas reinhardtii
Kazusa DNA Research Institute