KCC002906A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002906A_C01 KCC002906A_c01
aCTGTTCAGACCTCAGTGAAAGCGCTTGACCGTCACTGCTCTCCTGAGGTTTTCCAACCA
ACCGCGTATTTATTTCTTTTATCGGAGCGCCTTGAATTGGAGACCCGCCGAATTCCCTGT
TCGGAGTGAAGTAATTAGCTCACGAGAATGACCCAGGTCCTGGGCTCAAGTCGCTCTGTC
GGGAGATGCAGTGCACGACGACGCATCGGTGTCCCAGCTCAAGCTGTCCGGCGCCCCAGG
CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGGGGATGCAAGCGGC
AGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGACGCTGCTGACGCCGCTGCGGCC
TCCTCCTCCAGTGTGGTCCCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGC
GAGTTCAGGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGTCTGCG
GACGAGTGGGCGCACATCATTCTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002906A_C01 KCC002906A_c01
         (504 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_147795.1| hypothetical protein [Aeropyrum pernix] gi|7516...    39  0.028
ref|NP_737560.1| putative serine protease, heat shock protein [C...    39  0.048
ref|NP_003967.1| neurotrophic factor artemin isoform 1, precurso...    38  0.062
ref|ZP_00138699.1| COG2133: Glucose/sorbosone dehydrogenases [Ps...    38  0.062
ref|ZP_00138701.1| COG2133: Glucose/sorbosone dehydrogenases [Ps...    38  0.062

>ref|NP_147795.1| hypothetical protein [Aeropyrum pernix] gi|7516340|pir||F72593
           hypothetical protein APE1215 - Aeropyrum pernix (strain
           K1) gi|5104890|dbj|BAA80204.1| 161aa long hypothetical
           protein [Aeropyrum pernix]
          Length = 161

 Score = 39.3 bits (90), Expect = 0.028
 Identities = 34/98 (34%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
 Frame = -3

Query: 490 PTRPQ--TLMPILARGFGRPAWP*TRANRSDCPGRAACRGPHWRRRPQRRQQ-------- 341
           P+RP   T +P+L  G+ R              G  ACRG  WR RP   ++        
Sbjct: 31  PSRPPGGTPLPLLPAGWRR--------------GFLACRGRPWRLRPASSRRWLGCPASI 76

Query: 340 -----RPSPDAAAWAARRCRLHPLTLPRRWPGPCAGRG 242
                R SP AA   +RRC  H  TL     GPC GRG
Sbjct: 77  PVYDIRLSPRAAG-PSRRCTAHSCTL----EGPCRGRG 109

>ref|NP_737560.1| putative serine protease, heat shock protein [Corynebacterium
           efficiens YS-314] gi|23492788|dbj|BAC17760.1| putative
           serine protease, heat shock protein [Corynebacterium
           efficiens YS-314]
          Length = 473

 Score = 38.5 bits (88), Expect = 0.048
 Identities = 18/34 (52%), Positives = 22/34 (63%), Gaps = 1/34 (2%)
 Frame = -1

Query: 273 GAGPDRAQAGVPGAPDSLSWDTDASSC-TASPDR 175
           G+G D+ QAG PG P   SWDTDA+   T  P+R
Sbjct: 80  GSGTDKRQAGDPGTPAWTSWDTDATGMDTTQPER 113

>ref|NP_003967.1| neurotrophic factor artemin isoform 1, precursor; neublastin;
           enovin [Homo sapiens] gi|16950643|ref|NP_476432.1|
           neurotrophic factor artemin isoform 1, precursor;
           neublastin; enovin [Homo sapiens]
           gi|4071353|gb|AAC98690.1| neurotrophic factor artemin
           precursor [Homo sapiens] gi|4235099|gb|AAD13109.1|
           Artemin [Homo sapiens] gi|4455085|gb|AAD21075.1|
           pre-pro-neublastin [Homo sapiens]
           gi|5708149|emb|CAB52396.1| pre-pro-enovin [Homo sapiens]
          Length = 220

 Score = 38.1 bits (87), Expect = 0.062
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +2

Query: 203 ASVSQLKLSGAPGTPACARSGPAPRKSQGMQAAAASRPSGRIRRWTLLTPLRPPPPVWSP 382
           +SV++  L  AP +PA  R GP P     + + A   P GR  RW      RPPP    P
Sbjct: 34  SSVAEASLGSAPRSPA-PREGPPPV----LASPAGHLPGGRTARWCSGRARRPPPQPSRP 88

Query: 383 TRCPTWAVRAI------GASSGPSWSPKAAGKDRHQRLRT 484
              P     A+        + GP    +AAG  R  RLR+
Sbjct: 89  APPPPAPPSALPRGGRAARAGGPGSRARAAGA-RGCRLRS 127

>ref|ZP_00138699.1| COG2133: Glucose/sorbosone dehydrogenases [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 653

 Score = 38.1 bits (87), Expect = 0.062
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
 Frame = +3

Query: 228 PAPQAPLPAHGPGQRR--------------GRVRGCKRQRRAAQAAASGDG---RC*RRC 356
           P P AP P  GPG  R               R    +R  R   A A+G     R  R  
Sbjct: 84  PRPTAPAPGQGPGAGRQSQSLRAPDEGAGPARPAAARRHHRRRPAGAAGRDQRYRAFRPQ 143

Query: 357 GLLLQCGPRHAALPGQSERLARVQGQAGLPKPRAR 461
           G   Q GP H  +PG      R+ G A  P+P+ +
Sbjct: 144 GRGAQVGPAHPRIPG-----GRLSGSARFPRPQGQ 173

>ref|ZP_00138701.1| COG2133: Glucose/sorbosone dehydrogenases [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 611

 Score = 38.1 bits (87), Expect = 0.062
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
 Frame = +3

Query: 228 PAPQAPLPAHGPGQRR--------------GRVRGCKRQRRAAQAAASGDG---RC*RRC 356
           P P AP P  GPG  R               R    +R  R   A A+G     R  R  
Sbjct: 42  PRPTAPAPGQGPGAGRQSQSLRAPDEGAGPARPAAARRHHRRRPAGAAGRDQRYRAFRPQ 101

Query: 357 GLLLQCGPRHAALPGQSERLARVQGQAGLPKPRAR 461
           G   Q GP H  +PG      R+ G A  P+P+ +
Sbjct: 102 GRGAQVGPAHPRIPG-----GRLSGSARFPRPQGQ 131



EST assemble image


clone accession position
1 LC043c04_r AV621963 1 504
2 LCL034b08_r AV627938 2 230




Chlamydomonas reinhardtii
Kazusa DNA Research Institute