KCC002903A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002903A_C01 KCC002903A_c01
gcagacagccggttactcATCCGGCTGGGTGCCATGCATAGCGCTCCGGAATCCGCTCCC
GTCCACATAGTCCAGGACTGCCTCGCTGGGCACATGGCCGCCGGTGCATCGCAAACCTCC
GTAACACTGCGCCTCCACGTCGCAACCCCGTAGTAACCTAACCGCTGTACCAATGCCTGC
GAGACTCCTAGCTCGGCCTGCTCAGCAACCCATGCCCAGCTGGCTGCCTTTACACGATGC
GCATACGATGCCGCTGCAGCACGCCAAACGCCACCGCCGGAGAACCGCAATTCAGTCGTT
TCGTCCGCCGCTTCATCTCCACTGGCACCTGCACTCTCCGTCTCCGGCCTGCCTGCCTTG
AGGCGCTGTACCCATGTGTGCGGTGAACACCGACGACACGCGACCTCAGCACACACGCGC
CAACGCCCACACGCAGCCCACCCATACGCACCAAAGCCCTCCAACACCCAAACAGCCTGC
TCGCAATGCCTGCACCACGCGTTGGGCTTTTGCCTCAGCCCCGCGCCGGCCGCACGGTTC
GTATTTCTTGCGATCAAGCCACCGGTCCACGGCGTcccccagccgccgtctggcacggac
atgtagtcggccaccctcctccccaatacgctgctcgcaccgcagctttgctcgc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002903A_C01 KCC002903A_c01
         (655 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_723981.1| CG31738-PA [Drosophila melanogaster] gi|1072882...    42  0.010
ref|NP_609801.2| CG31738-PB [Drosophila melanogaster] gi|2294664...    42  0.010
pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospor...    40  0.023
emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa]     40  0.023
emb|CAD38614.1| hypothetical protein [Homo sapiens]                    40  0.040

>ref|NP_723981.1| CG31738-PA [Drosophila melanogaster] gi|10728825|gb|AAF53547.2|
           CG31738-PA [Drosophila melanogaster]
           gi|20151613|gb|AAM11166.1| LD30602p [Drosophila
           melanogaster]
          Length = 1413

 Score = 41.6 bits (96), Expect = 0.010
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
 Frame = +1

Query: 259 ARQTPPPENRNSVVSSAASSPL---APAL----SVSGLPALRRCTHVCGEHRRHATS-AH 414
           A Q PPP  +        + P    AP+     +  G PA    TH       H+ + +H
Sbjct: 63  APQGPPPPQQQQQQQQQVAPPAVQGAPSTGSVGAAQGAPATATATHTHAHSHSHSHAHSH 122

Query: 415 TRQRPHAAHPYAPKPSNTQTACSQCLHHAL 504
           T  +PHA  P++P P N +   SQ  H+ L
Sbjct: 123 THPQPHAHSPHSPSPPNYRDERSQRQHNKL 152

>ref|NP_609801.2| CG31738-PB [Drosophila melanogaster] gi|22946643|gb|AAF53546.3|
           CG31738-PB [Drosophila melanogaster]
          Length = 1700

 Score = 41.6 bits (96), Expect = 0.010
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
 Frame = +1

Query: 259 ARQTPPPENRNSVVSSAASSPL---APAL----SVSGLPALRRCTHVCGEHRRHATS-AH 414
           A Q PPP  +        + P    AP+     +  G PA    TH       H+ + +H
Sbjct: 350 APQGPPPPQQQQQQQQQVAPPAVQGAPSTGSVGAAQGAPATATATHTHAHSHSHSHAHSH 409

Query: 415 TRQRPHAAHPYAPKPSNTQTACSQCLHHAL 504
           T  +PHA  P++P P N +   SQ  H+ L
Sbjct: 410 THPQPHAHSPHSPSPPNYRDERSQRQHNKL 439

>pir||T51023 hypothetical protein B7F21.40 [imported] - Neurospora crassa
          Length = 2649

 Score = 40.4 bits (93), Expect = 0.023
 Identities = 42/157 (26%), Positives = 66/157 (41%), Gaps = 13/157 (8%)
 Frame = +1

Query: 157  PNRCTNACETPSSACSATHAQLAAFTRCAYDAAAARQTPPPENRNSV------VSSAAS- 315
            P + + A E P    +      +   + + + +AA+  PPP+   ++      VSS  S 
Sbjct: 1947 PPQLSPAMERPPVPSTQRPMPTSMQEQYSANTSAAQPVPPPQAPPAIPPEPKKVSSIFSI 2006

Query: 316  ----SPLAPALSVSGLPALRRCTHVCGEHRRHATSAHTRQRPHAAHPYAPKPSNTQTACS 483
                +P APA      PA +R   V    R  +TS    Q+  A  P  P P+   +A  
Sbjct: 2007 LNDDNPPAPA------PAPKRVNDVASMPRAASTSTPPPQQMSARPPQPPPPTTAVSASQ 2060

Query: 484  QCLHHALG--FCLSPAPAARFVFLAIKPPVHGVPQPP 588
            +    ALG  +  +P  AA+    ++KP     PQPP
Sbjct: 2061 RRDTEALGYSYARNPPSAAQAAMPSLKPYHTQSPQPP 2097

>emb|CAB97476.2| conserved hypothetical protein [Neurospora crassa]
          Length = 2592

 Score = 40.4 bits (93), Expect = 0.023
 Identities = 42/157 (26%), Positives = 66/157 (41%), Gaps = 13/157 (8%)
 Frame = +1

Query: 157  PNRCTNACETPSSACSATHAQLAAFTRCAYDAAAARQTPPPENRNSV------VSSAAS- 315
            P + + A E P    +      +   + + + +AA+  PPP+   ++      VSS  S 
Sbjct: 1947 PPQLSPAMERPPVPSTQRPMPTSMQEQYSANTSAAQPVPPPQAPPAIPPEPKKVSSIFSI 2006

Query: 316  ----SPLAPALSVSGLPALRRCTHVCGEHRRHATSAHTRQRPHAAHPYAPKPSNTQTACS 483
                +P APA      PA +R   V    R  +TS    Q+  A  P  P P+   +A  
Sbjct: 2007 LNDDNPPAPA------PAPKRVNDVASMPRAASTSTPPPQQMSARPPQPPPPTTAVSASQ 2060

Query: 484  QCLHHALG--FCLSPAPAARFVFLAIKPPVHGVPQPP 588
            +    ALG  +  +P  AA+    ++KP     PQPP
Sbjct: 2061 RRDTEALGYSYARNPPSAAQAAMPSLKPYHTQSPQPP 2097

>emb|CAD38614.1| hypothetical protein [Homo sapiens]
          Length = 287

 Score = 39.7 bits (91), Expect = 0.040
 Identities = 54/200 (27%), Positives = 72/200 (36%), Gaps = 11/200 (5%)
 Frame = +2

Query: 32  PCIALRNPLPST*SRTASLGTWPPVHRKPP*H--CASTSQPRSNLTAVP-----MPARLL 190
           PC A     P+     A+L T P  H  P     C  T+ P S LT  P     +   L 
Sbjct: 16  PCHA-----PAQLPSLAALQTHPQAHPAPHSRLTCRPTTAPHSRLTPRPTLAPTLQTHLQ 70

Query: 191 ARPAQQ----PMPSWLPLHDAHTMPLQHAKRHRRRTAIQSFRPPLHLHWHLHSPSPACLP 358
           A PA      P P+  P    H     H   H R T   +  P LH H   H P P    
Sbjct: 71  AHPAPHSRLTPRPTPAPTLQTHLQA--HPVPHSRLTPRPTPAPTLHTHLQAH-PVP---- 123

Query: 359 *GAVPMCAVNTDDTRPQHTRANAHTQPTHTHQSPPTPKQPARNACTTRWAFASAPRRPHG 538
                        +R       A T  TH  Q+ P+P  P   A + +   +   RRP  
Sbjct: 124 ------------HSRLTRRPTPAPTLQTHL-QAHPSPHTPDSPAGSPQPPHSRLTRRPTP 170

Query: 539 SYFLRSSHRSTASPSRRLAR 598
           +  L++  ++  +P  RL R
Sbjct: 171 APTLQTHLQAHPAPHSRLTR 190

 Score = 38.9 bits (89), Expect = 0.067
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
 Frame = +3

Query: 390 PTTRDLSTHAPTPTRSPPIRTKALQHPNSLLAMPAPRVGLLPQPRAGRTVRISCD----- 554
           PTT   S   P PT +P ++T        L A PAP   L P+P    T++         
Sbjct: 47  PTTAPHSRLTPRPTLAPTLQT-------HLQAHPAPHSRLTPRPTPAPTLQTHLQAHPVP 99

Query: 555 -QATGPRRPPAAVWHGHVVGHPPP 623
                PR  PA   H H+  HP P
Sbjct: 100 HSRLTPRPTPAPTLHTHLQAHPVP 123



EST assemble image


clone accession position
1 LC042e03_r AV621909 1 501
2 MX043b09_r BP087765 265 717




Chlamydomonas reinhardtii
Kazusa DNA Research Institute