KCC002902A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002902A_C01 KCC002902A_c01
GTATTATTACTCCAACATGCTTGTACAGTCGCGCGTCCTGCCTGGGGCGCCAGACTTGCG
CCCGCCCAGCCCAGGCTGTGAGGCCCTTGCGCATTGCACCGCGTTCGCTAGCGGATGCAC
CGCGTCAGTCGGTCGATCCACTCGCGAACAAGCCGCGCGCTGCAGGGCCCTCCGCTGGAA
CTGTATTTCCGATTTACACACCAGAGGAGGTGGAAGCTATCCTGAATGCTAACAAGGAGA
AGCTGGTCATCGTCATGTGCAAGTCCTCTCACTGCAAGCCCTGCAAGGCGTTCATGCCCA
AATATCAGCGCATGGCTGAGATCCTGACGGATTCGCTGCTGCTGGAGCTGACGGGGGACC
ACTCCCCGGAGACCAAGAAACTCATGGTCTCGTGGGGCGTCAAGTCCACGCCGACCTTCC
GCATGTACCGCAACGGCGAGGTGGTGGCCAGCGCCTCGGGCGCGCGCGAGAGCAAGGTGC
TGCCGGTGCTGATTGAGGCGCTCAAGGACGGCGAGAAGGGCAAGAACATCAAGGCGGAGG
ACCTGGAGGCGCCCACTGAGGACGAGGACGACGAGTAGACGTCAGGCGCAAGGGGCGCAG
CAGGGGGCAGCGGCGGCGATTTTGCGCTGGCACTGTCCGTCGGCTTGTTGCCGCGTGCCC
TTCCTGCTACGCGGAAAGGAAAGAGCGTTAGCTAGCGCGAGGGGCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002902A_C01 KCC002902A_c01
         (707 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO20261.1| thioredoxin f1 [Chlamydomonas reinhardtii]              61  1e-08
sp|O81332|THIF_MESCR Thioredoxin F-type, chloroplast precursor (...    60  3e-08
ref|NP_186922.1| thioredoxin, putative [Arabidopsis thaliana] gi...    60  3e-08
sp|P09856|THIF_SPIOL Thioredoxin F-type, chloroplast precursor (...    60  4e-08
pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spin...    60  4e-08

>gb|AAO20261.1| thioredoxin f1 [Chlamydomonas reinhardtii]
          Length = 173

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 44/139 (31%), Positives = 69/139 (48%), Gaps = 8/139 (5%)
 Frame = +3

Query: 75  AVRPLRIA-PRSLADAPRQSVDPLANKPRAAGPSAGTV-----FPIYTPEEVEAILNANK 236
           A+RP+ +A PR    AP  S    A+   A   + G V       I T +     L  N 
Sbjct: 24  ALRPVAVAVPRKRLAAPLSSA-ATASAVTATEQAVGEVAIANGVHILTADTYHGFLEKNA 82

Query: 237 EKLVIVMCKSSHCKPCKAFMPKYQRMAEILTDSLLLELTGD--HSPETKKLMVSWGVKST 410
           EKLV+    +  C PCK   P+ +R+A  +  S ++    D   + E+KKL ++  +K+ 
Sbjct: 83  EKLVVTDFYAVWCGPCKVIAPEIERLANEMDASQVVFAKMDCGATNESKKLAMALNIKAL 142

Query: 411 PTFRMYRNGEVVASASGAR 467
           PTF +YRN + + S +GA+
Sbjct: 143 PTFHLYRNSKQIDSMTGAK 161

>sp|O81332|THIF_MESCR Thioredoxin F-type, chloroplast precursor (TRX-F)
           gi|7430844|pir||T12261 thioredoxin f precursor - common
           ice plant gi|3202022|gb|AAC19392.1| thioredoxin F
           precursor [Mesembryanthemum crystallinum]
          Length = 191

 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 31/91 (34%), Positives = 51/91 (55%)
 Frame = +3

Query: 219 ILNANKEKLVIVMCKSSHCKPCKAFMPKYQRMAEILTDSLLLELTGDHSPETKKLMVSWG 398
           I N   +K V++   +  C PCK   PKYQ +AE L D + L+L  D + E K L    G
Sbjct: 97  IANGAGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKL--DCNQENKPLAKELG 154

Query: 399 VKSTPTFRMYRNGEVVASASGARESKVLPVL 491
           ++  PTF++ + G++V   +GA+  K++  +
Sbjct: 155 IRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185

>ref|NP_186922.1| thioredoxin, putative [Arabidopsis thaliana]
           gi|27735269|sp|Q9XFH8|THF1_ARATH Thioredoxin F-type 1,
           chloroplast precursor (TRX-F1)
           gi|6728989|gb|AAF26987.1|AC018363_32 thioredoxin f1
           [Arabidopsis thaliana] gi|17529210|gb|AAL38832.1|
           putative thioredoxin f1 protein [Arabidopsis thaliana]
           gi|20466041|gb|AAM20355.1| putative thioredoxin f1
           protein [Arabidopsis thaliana]
           gi|21537004|gb|AAM61345.1| thioredoxin f1 [Arabidopsis
           thaliana]
          Length = 178

 Score = 60.1 bits (144), Expect = 3e-08
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
 Frame = +3

Query: 9   TPTCLYSRASCLG--RQTCARPAQAVRPLRIAPRSLADAPRQSVDPLANKPRAAGPSAGT 182
           +PT L       G  R+ C  P   V   +I   SL    R     +         S G 
Sbjct: 10  SPTALSPTTGGFGPSRKQCRIPYSGVPTTKIGFCSLDSRKRGDSSVVRCSLETVNVSVGQ 69

Query: 183 VFPIYTPEEVEAILNANKEKLVIVMCKSSHCKPCKAFMPKYQRMAEILTDSLLLELTGDH 362
           V  +   +    I+ A  EKLV++   +  C PCK   PKY+ ++E   D + L+L  D 
Sbjct: 70  VTEV-DKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKL--DC 126

Query: 363 SPETKKLMVSWGVKSTPTFRMYRNGEVVASASGARESKVLPVLIEALKDGEKG 521
           +P+ + L    G++  PTF++ ++ +VV   +GA+    L   IE  +    G
Sbjct: 127 NPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDD-LVAAIETARSAASG 178

>sp|P09856|THIF_SPIOL Thioredoxin F-type, chloroplast precursor (TRX-F)
           gi|81490|pir||S04661 thioredoxin f precursor - spinach
           gi|21344|emb|CAA33082.1| unnamed protein product
           [Spinacia oleracea]
          Length = 190

 Score = 59.7 bits (143), Expect = 4e-08
 Identities = 31/91 (34%), Positives = 51/91 (55%)
 Frame = +3

Query: 219 ILNANKEKLVIVMCKSSHCKPCKAFMPKYQRMAEILTDSLLLELTGDHSPETKKLMVSWG 398
           I+ A  +K V++   +  C PCKA  PKY+++AE   D + L+L  D + E K L    G
Sbjct: 96  IVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKL--DCNQENKTLAKELG 153

Query: 399 VKSTPTFRMYRNGEVVASASGARESKVLPVL 491
           ++  PTF++ +   VV   +GA+  K+L  +
Sbjct: 154 IRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Short Form) gi|10835711|pdb|1F9M|B Chain B,
           Crystal Structure Of Thioredoxin F From Spinach
           Chloroplast (Short Form)
          Length = 112

 Score = 59.7 bits (143), Expect = 4e-08
 Identities = 31/91 (34%), Positives = 51/91 (55%)
 Frame = +3

Query: 219 ILNANKEKLVIVMCKSSHCKPCKAFMPKYQRMAEILTDSLLLELTGDHSPETKKLMVSWG 398
           I+ A  +K V++   +  C PCKA  PKY+++AE   D + L+L  D + E K L    G
Sbjct: 19  IVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKL--DCNQENKTLAKELG 76

Query: 399 VKSTPTFRMYRNGEVVASASGARESKVLPVL 491
           ++  PTF++ +   VV   +GA+  K+L  +
Sbjct: 77  IRVVPTFKILKENSVVGEVTGAKYDKLLEAI 107



EST assemble image


clone accession position
1 LC090c06_r AV625275 1 623
2 LCL033c03_r AV627877 69 551
3 MX245e06_r BP091871 100 390
4 LC041h09_r AV621864 236 801
5 MX217d06_r BP090011 262 652




Chlamydomonas reinhardtii
Kazusa DNA Research Institute