KCC002901A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002901A_C01 KCC002901A_c01
CCAGGCACAAAACGTACTACGCACCAGAGCCTCTGAGCGCGCGAAAGTTTGCTTCGGCGC
GATCTTCAACTTGAACTTCTTCGCTTATATAGCCCGCAAAGATGGCCTGGGAAGCCTACA
TTACCTCCAACCTGATGTGCCCGGTGGACTCAGAGGGAAACACTCTGGACAGCGCAGCGA
TTCTGGGCCTGGATGGCAGCTCAGTCTGGGCGAGCAGCGCCGCGTTTCAGGCGCTGAACG
ATGAGGAGGCCAGGAAGTTTGTTGCTGCATTCGATGACGTCTCCATTGCTTCGGTGATGC
TTGCGGGTGCCCAAGTACCTGAAGACTTCTGCAGACGGGACCATTTTCCGCGGCCGCAAG
GACAAGAGCGGCTTTGTTGCTCGCAAGGGCGCCCAGTGCATCATTATTGGCTTCTACACG
GATCCGCCGGTCTCCGCCCAGACCTGCAACAAGGTGGTGGAGGCTCTGGCTGACTACCTC
GCGGACCAGGGGTACTAAACTTGACTTGGTGGGTGCAGTCTGTCGAGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002901A_C01 KCC002901A_c01
         (529 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK54060.1| profilin [Chlamydomonas reinhardtii]                   139  4e-64
sp|O81982|PROF_HELAN Profilin (Pollen allergen Hel a 2) gi|74893...    62  6e-18
gb|AAM52217.1| profilin 1 [Ceratopteris richardii]                     58  2e-17
sp|Q41344|PRO1_LYCES Profilin 1 gi|7441438|pir||T07856 profilin ...    55  2e-17
sp|Q9XF42|PRO3_MALDO Profilin 3 (GD4-5) (Pollen allergen Mal d 4...    57  8e-17

>gb|AAK54060.1| profilin [Chlamydomonas reinhardtii]
          Length = 131

 Score =  139 bits (350), Expect(2) = 4e-64
 Identities = 70/71 (98%), Positives = 71/71 (99%)
 Frame = +3

Query: 102 MAWEAYITSNLMCPVDSEGNTLDSAAILGLDGSSVWASSAAFQALNDEEARKFVAAFDDV 281
           MAWEAYITSNLMCPVDSEGNTLDSAAILGLDGSSVWASSAAFQALNDEEARKFVAAFDDV
Sbjct: 1   MAWEAYITSNLMCPVDSEGNTLDSAAILGLDGSSVWASSAAFQALNDEEARKFVAAFDDV 60

Query: 282 SIASVMLAGAQ 314
           SIASVMLAGA+
Sbjct: 61  SIASVMLAGAK 71

 Score =  127 bits (319), Expect(2) = 4e-64
 Identities = 61/61 (100%), Positives = 61/61 (100%)
 Frame = +1

Query: 313 KYLKTSADGTIFRGRKDKSGFVARKGAQCIIIGFYTDPPVSAQTCNKVVEALADYLADQG 492
           KYLKTSADGTIFRGRKDKSGFVARKGAQCIIIGFYTDPPVSAQTCNKVVEALADYLADQG
Sbjct: 71  KYLKTSADGTIFRGRKDKSGFVARKGAQCIIIGFYTDPPVSAQTCNKVVEALADYLADQG 130

Query: 493 Y 495
           Y
Sbjct: 131 Y 131

>sp|O81982|PROF_HELAN Profilin (Pollen allergen Hel a 2) gi|7489342|pir||T31427 profilin
           - common sunflower gi|3581965|emb|CAA75506.1| profilin
           [Helianthus annuus]
          Length = 133

 Score = 61.6 bits (148), Expect(2) = 6e-18
 Identities = 31/74 (41%), Positives = 46/74 (61%), Gaps = 3/74 (4%)
 Frame = +3

Query: 102 MAWEAYITSNLMCPVDSEGNTLDSAAILGLDGSSVWASSAAFQALNDEEARKFVAAFDD- 278
           M+W+AY+  +LMC ++  G  L SAAILGLDG +VWA SA F     EE +  +  FD+ 
Sbjct: 1   MSWQAYVDEHLMCDIEGTGQHLTSAAILGLDG-TVWAQSAKFPQFKPEEMKGIIKEFDEA 59

Query: 279 --VSIASVMLAGAQ 314
             ++   + +AGA+
Sbjct: 60  GTLAPTGMFIAGAK 73

 Score = 50.4 bits (119), Expect(2) = 6e-18
 Identities = 26/61 (42%), Positives = 35/61 (56%), Gaps = 1/61 (1%)
 Frame = +1

Query: 313 KYLKTSAD-GTIFRGRKDKSGFVARKGAQCIIIGFYTDPPVSAQTCNKVVEALADYLADQ 489
           KY+    + G + RG+K   G   +K  Q +I+G Y D PV+   CN VVE L DYL +Q
Sbjct: 73  KYMVLQGEPGAVIRGKKGAGGICIKKTGQAMIMGIY-DEPVAPGQCNMVVERLGDYLLEQ 131

Query: 490 G 492
           G
Sbjct: 132 G 132

>gb|AAM52217.1| profilin 1 [Ceratopteris richardii]
          Length = 133

 Score = 58.2 bits (139), Expect(2) = 2e-17
 Identities = 28/62 (45%), Positives = 36/62 (57%), Gaps = 1/62 (1%)
 Frame = +1

Query: 313 KYLKTSAD-GTIFRGRKDKSGFVARKGAQCIIIGFYTDPPVSAQTCNKVVEALADYLADQ 489
           KYL    D G + RG+K + G   +K   C+IIG Y DP    Q CN VVE + DYL +Q
Sbjct: 73  KYLVVQGDPGVVIRGKKTQGGVTIKKTNMCLIIGLYDDPVTGGQ-CNSVVEKIGDYLCEQ 131

Query: 490 GY 495
           G+
Sbjct: 132 GF 133

 Score = 52.4 bits (124), Expect(2) = 2e-17
 Identities = 22/59 (37%), Positives = 38/59 (64%)
 Frame = +3

Query: 102 MAWEAYITSNLMCPVDSEGNTLDSAAILGLDGSSVWASSAAFQALNDEEARKFVAAFDD 278
           M+W AY+  +LM P  + G+TL +A I+G+D  ++WA S+ F  +  +E +  + AF+D
Sbjct: 1   MSWNAYVDDHLMAPF-ATGDTLTAAGIIGIDDQAMWAYSSKFPEMKPQEVKDIINAFED 58

>sp|Q41344|PRO1_LYCES Profilin 1 gi|7441438|pir||T07856 profilin 1 - tomato
           gi|1399496|gb|AAB03271.1| profilin
          Length = 133

 Score = 55.5 bits (132), Expect(2) = 2e-17
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
 Frame = +3

Query: 102 MAWEAYITSNLMCPVDSEGNTLDSAAILGLDGSSVWASSAAFQALNDEEARKFVAAFDD- 278
           M+W+ Y+  +LMC ++  G+ L SAAILG DG SVWA S  F     EE    +  FD+ 
Sbjct: 1   MSWQTYVDDHLMCDIEGTGHHLSSAAILGFDG-SVWAQSPNFPKFKAEEITNIMKDFDEP 59

Query: 279 --VSIASVMLAGAQ 314
             ++   + LAG +
Sbjct: 60  GHLAPTGLFLAGTK 73

 Score = 54.7 bits (130), Expect(2) = 2e-17
 Identities = 27/62 (43%), Positives = 35/62 (55%), Gaps = 1/62 (1%)
 Frame = +1

Query: 313 KYLKTSAD-GTIFRGRKDKSGFVARKGAQCIIIGFYTDPPVSAQTCNKVVEALADYLADQ 489
           KY+    + G + RG+K   G   +K AQ +I G Y +P    Q CN VVE + DYL DQ
Sbjct: 73  KYMVIQGEPGAVIRGKKGPGGITIKKTAQALIFGVYEEPVTPGQ-CNMVVEKIGDYLVDQ 131

Query: 490 GY 495
           GY
Sbjct: 132 GY 133

>sp|Q9XF42|PRO3_MALDO Profilin 3 (GD4-5) (Pollen allergen Mal d 4)
           gi|4761588|gb|AAD29414.1|AF129428_1 profilin [Malus x
           domestica]
          Length = 131

 Score = 56.6 bits (135), Expect(2) = 8e-17
 Identities = 29/58 (50%), Positives = 38/58 (65%)
 Frame = +3

Query: 102 MAWEAYITSNLMCPVDSEGNTLDSAAILGLDGSSVWASSAAFQALNDEEARKFVAAFD 275
           M+W+AY+  +LMC +D  GN L +AAILG DG SVW+ SA+F A   EE    +  FD
Sbjct: 1   MSWQAYVDDHLMCDID--GNRLTAAAILGQDG-SVWSQSASFPAFKPEEIAAILKDFD 55

 Score = 51.6 bits (122), Expect(2) = 8e-17
 Identities = 26/61 (42%), Positives = 36/61 (58%), Gaps = 1/61 (1%)
 Frame = +1

Query: 313 KYLKTSAD-GTIFRGRKDKSGFVARKGAQCIIIGFYTDPPVSAQTCNKVVEALADYLADQ 489
           KY+    + G + RG+K   G   +K +Q ++IG Y D PV+   CN VVE L DYL +Q
Sbjct: 71  KYMVIQGEPGAVIRGKKGSGGITIKKTSQALLIGIY-DEPVTPGQCNIVVERLGDYLIEQ 129

Query: 490 G 492
           G
Sbjct: 130 G 130



EST assemble image


clone accession position
1 LC041a09_r AV621795 1 460
2 LC068h06_r AV623805 1 509
3 LC074e12_r AV624219 5 482
4 LC079b09_r AV624542 11 514
5 LC063d05_r AV623410 29 538




Chlamydomonas reinhardtii
Kazusa DNA Research Institute