KCC002900A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002900A_C01 KCC002900A_c01
gtgcaaattccccttcgcgggtggcCCCTTCCGTTTCTGCGACCGACGCGTGCGGACCGG
ACCGGACCTAAGCCCTTCGCCGTAGTTCGCGGCCTTCTAGTGTGCCAGGCTTCCTCCGTC
ACCCCCGGCGCCTACTGTCTCCCTACTCCCTCCTCCGGTTTCCCTTCGGGATTGCGACCG
ATCCAGCCTACTGTCTCCCTACTCCCCCCCTTCCGGTTTCCCTTCGGGATTGCGACAGAC
TACCGCTCCCGACTCCTGCTCTCTTCTACCAGCCATCTGGTCTGCATACTGTATCCACCA
GCCTTGGGTGTTCTCCTGTTGACTGGTATATCTGACTGTATCATCCTCCGACCACACATC
TGGTATCTCCGATTATTGCTGTGATCGCCGCAGGCGCATCTTAATCGCTGCAGGTGCCCA
GGACAGCTGCTGGTACCCGTGTGCATACCCTGGGAAGGTCAAAGCGGTGTAGGCCGGTCG
TCATACACCTGCATCGTGGCCAGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002900A_C01 KCC002900A_c01
         (505 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_859495.1| hypothetical protein Chr3_0620 [Leishmania majo...    41  0.007
dbj|BAC83130.1| hypothetical protein [Oryza sativa (japonica cul...    39  0.036
ref|XP_326284.1| hypothetical protein [Neurospora crassa] gi|289...    37  0.14
ref|NP_694988.2| hypothetical protein MGC35403 [Homo sapiens] gi...    37  0.14
gb|AAH17269.1| MGC35403 protein [Homo sapiens]                         37  0.14

>ref|NP_859495.1| hypothetical protein Chr3_0620 [Leishmania major]
            gi|21629359|gb|AAM69036.1|AC125735_66 hypothetical
            protein Chr3_0620 [Leishmania major]
          Length = 2998

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
 Frame = +1

Query: 19   GWPLPFLRPTR--------ADRTGPKPFAVVRGLLVCQASSVTPGAYCLPTPSSGFP--- 165
            G PLPF   T         A+ TGP+P +   G+  CQ+ S++P A     P+SG P   
Sbjct: 2430 GAPLPFRLSTLTMPVATVGANGTGPEPGSTAAGVAECQSFSLSPSASGAAAPTSGAPAIT 2489

Query: 166  SGLRPIQPTVSLLPPFRFPFGIATDYRSRLLLSSTSHL 279
            S   P++PT+      R      T    R++L  T+HL
Sbjct: 2490 SVFPPVRPTICGSCVVR-----GTCTMERVVLRPTNHL 2522

>dbj|BAC83130.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 250

 Score = 38.9 bits (89), Expect = 0.036
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +3

Query: 30  SVSATDACGPDRT*ALRRSSRPSSVPGFLRHPRRLLSPYSLLRFPFGIATD-PAYCLPTP 206
           ++SA+  C P R    +   RP+  P     P R L P SL R P   A+  P + +PT 
Sbjct: 107 AISASPTCRPHRHSGRQLRPRPTPAPAAANSPSRSLVPSSLPRPPRPTASPRPRHVVPTV 166

Query: 207 PLPVSL-----RDCDRLPLPTPALFYQP 275
               S      R    LP PT A F QP
Sbjct: 167 DAAGSYGRPSPRHATSLPAPTDAAFPQP 194

>ref|XP_326284.1| hypothetical protein [Neurospora crassa] gi|28918410|gb|EAA28084.1|
           hypothetical protein [Neurospora crassa]
          Length = 1027

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 33/112 (29%), Positives = 46/112 (40%), Gaps = 3/112 (2%)
 Frame = +2

Query: 113 PPSPPAPTVSLLPPPVSLRDCDRSSLLSPYSPPSGFPSGLRQTTAPDSCSLLPAIWSAYC 292
           P  P AP     P PV   + D + L SP  PP+             SC   PAI     
Sbjct: 141 PTPPAAPAAPATPTPVPRLNTDHTELASPGPPPAA------------SC---PAIGRPPS 185

Query: 293 IHQPWVFSC*LVYLTVSSSDHTSGIS--DYCCDRRRRILIAAGAQDSCW-YP 439
           +          ++ T SSSDH+S +S  D   D RR  ++ + +  S + YP
Sbjct: 186 LS---------IHSTASSSDHSSSLSDGDLVFDSRRSSVVTSASTASAYNYP 228

>ref|NP_694988.2| hypothetical protein MGC35403 [Homo sapiens]
           gi|28981305|gb|AAH48800.1| Hypothetical protein MGC35403
           [Homo sapiens]
          Length = 435

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 22/47 (46%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 PPSPPAPTVSLLPPPV-SLRDCDRSSLLSPYSPPSGFPSGLRQTTAP 250
           PP PPAP   L PPP+ S  D  R  L +P SPP   P  LR    P
Sbjct: 149 PPDPPAPETLLAPPPLPSTPDPPRRELRAP-SPPVEHPRLLRSVPTP 194

>gb|AAH17269.1| MGC35403 protein [Homo sapiens]
          Length = 341

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 22/47 (46%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 PPSPPAPTVSLLPPPV-SLRDCDRSSLLSPYSPPSGFPSGLRQTTAP 250
           PP PPAP   L PPP+ S  D  R  L +P SPP   P  LR    P
Sbjct: 149 PPDPPAPETLLAPPPLPSTPDPPRRELRAP-SPPVEHPRLLRSVPTP 194



EST assemble image


clone accession position
1 LC040h10_r AV621785 1 505
2 LCL047d06_r AV628809 26 275




Chlamydomonas reinhardtii
Kazusa DNA Research Institute