Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002899A_C01 KCC002899A_c01
(479 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_103096.1| hypothetical protein [Mesorhizobium loti] gi|14... 62 5e-09
ref|NP_539512.1| CREA PROTEIN [Brucella melitensis] gi|25525736|... 58 7e-08
ref|NP_698412.1| conserved hypothetical protein [Brucella suis 1... 58 7e-08
ref|ZP_00004232.1| COG3045: Uncharacterized protein conserved in... 55 3e-07
ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty ... 50 1e-05
>ref|NP_103096.1| hypothetical protein [Mesorhizobium loti]
gi|14022272|dbj|BAB48882.1| hypothetical protein
[Mesorhizobium loti]
Length = 172
Score = 61.6 bits (148), Expect = 5e-09
Identities = 36/98 (36%), Positives = 60/98 (60%), Gaps = 2/98 (2%)
Frame = +1
Query: 187 RVGASVAAVVASAAVLLDAGAAYADKERVAEFAASGLLFKDN-VEVTALDDPEISGVTIY 363
R+G + +A V+L AG+A A+ E G+ + N + V A+ DP++ GVT +
Sbjct: 9 RIGRKLIGGALAACVVLGAGSAVAE-----EVGKVGVDWVGNDIIVEAIKDPKVDGVTCH 63
Query: 364 FSDFKRNIVDKLQK-DFFAEPSQASLTCVVSGPVTIKD 474
S F R+I+D+L K ++F +PS +S++C +GP+TI D
Sbjct: 64 VSYFDRSIIDRLHKGNWFEDPSDSSISCRQTGPITIGD 101
>ref|NP_539512.1| CREA PROTEIN [Brucella melitensis] gi|25525736|pir||AE3326 creA
protein [imported] - Brucella melitensis (strain 16M)
gi|17982517|gb|AAL51776.1| CREA PROTEIN [Brucella
melitensis 16M]
Length = 199
Score = 57.8 bits (138), Expect = 7e-08
Identities = 30/84 (35%), Positives = 50/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 226 AVLLDAGAAYADKERVAEFAASGLLFKDNVEVTALDDPEISGVTIYFSDFKRNIVDKLQK 405
A +L A+ A E V + F +++ V A+ DP++ G+T Y + F R ++D+LQK
Sbjct: 47 APMLVFAASAAPAEEVGKVGVDW--FGNDIVVDAVHDPKVKGITCYLASFSRGMIDRLQK 104
Query: 406 -DFFAEPSQASLTCVVSGPVTIKD 474
++F PS AS++C +GP+ I D
Sbjct: 105 GNWFENPSNASISCEQTGPIVIGD 128
>ref|NP_698412.1| conserved hypothetical protein [Brucella suis 1330]
gi|23348260|gb|AAN30327.1|AE014437_3 conserved
hypothetical protein [Brucella suis 1330]
Length = 165
Score = 57.8 bits (138), Expect = 7e-08
Identities = 30/84 (35%), Positives = 50/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 226 AVLLDAGAAYADKERVAEFAASGLLFKDNVEVTALDDPEISGVTIYFSDFKRNIVDKLQK 405
A +L A+ A E V + F +++ V A+ DP++ G+T Y + F R ++D+LQK
Sbjct: 13 APMLVFAASAAPAEEVGKVGVDW--FGNDIVVDAVHDPKVKGITCYLASFSRGMIDRLQK 70
Query: 406 -DFFAEPSQASLTCVVSGPVTIKD 474
++F PS AS++C +GP+ I D
Sbjct: 71 GNWFENPSNASISCEQTGPIVIGD 94
>ref|ZP_00004232.1| COG3045: Uncharacterized protein conserved in bacteria [Rhodobacter
sphaeroides]
Length = 124
Score = 55.5 bits (132), Expect = 3e-07
Identities = 29/77 (37%), Positives = 48/77 (61%), Gaps = 1/77 (1%)
Frame = +1
Query: 247 AAYADKERVAEFAASGLLFKDNVEVTALDDPEISGVTIYFSDFKRNIVDKL-QKDFFAEP 423
A AD E V E + +++ + A+ DPE+ GVT + + F R+++D+L Q ++F +P
Sbjct: 49 ATPADAEVVGEVGVDWV--GNDILIEAIPDPEVQGVTCHIAYFDRSVIDRLRQGNWFEDP 106
Query: 424 SQASLTCVVSGPVTIKD 474
S AS+ C +GPVT+ D
Sbjct: 107 SNASIACRQTGPVTVGD 123
>ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of prolines 101-l;
Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens]
gi|3005587|gb|AAC09321.1| Ser/Arg-related nuclear matrix
protein [Homo sapiens]
gi|33150824|gb|AAP97290.1|AF419855_1 Ser/Arg-related
nuclear matrix protein [Homo sapiens]
Length = 820
Score = 50.4 bits (119), Expect = 1e-05
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Frame = -2
Query: 460 QGRSPRTLATPGRARQRSPSAACPQCYV*SRRSRWSRPKSPGHPAR*PPRCL*TAARWPR 281
+GR R+ + P R+RSPS A P RR R P PPR R P
Sbjct: 541 RGRRRRSPSPPPTRRRRSPSPAPP-----PRRRRTPTPPPRRRTPSPPPR-----RRSPS 590
Query: 280 TQPHAPCPRRRRLRPAGPPRWQ------PPLRRTHPRATQATRPAHF*HPSERDTP--PR 125
+ ++P P +RR P+ PP+ + PP RR P R +H P +R +P R
Sbjct: 591 PRRYSP-PIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKR 649
Query: 124 ETPGAS----PGASPGQST 80
+P S G+SP +ST
Sbjct: 650 RSPSLSSKHRKGSSPSRST 668
Score = 34.3 bits (77), Expect = 0.78
Identities = 41/144 (28%), Positives = 55/144 (37%), Gaps = 24/144 (16%)
Frame = -2
Query: 454 RSPRTLATPGRARQRSPSAACPQCY-----V*SRRSRWSRPKSPGHPAR*PPRCL*TAAR 290
RS + R R RSPS P+ + S R R S + P R PPR + R
Sbjct: 277 RSRSRSKSRSRTRSRSPSHTRPRRRHRSDKMYSPRRRPSPRRRPSPRRRTPPRRMPPPPR 336
Query: 289 WPRTQPHAPCPRRRRL--------------RPAGPPRWQP-----PLRRTHPRATQATRP 167
R++ +P RRRR R PP+ P P R+T + A+ P
Sbjct: 337 HRRSR--SPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPP 394
Query: 166 AHF*HPSERDTPPRETPGASPGAS 95
PS TPP+ +P S
Sbjct: 395 RRRHRPSPPATPPKTRDSPTPQQS 418
