KCC002898A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002898A_C01 KCC002898A_c01
aataaacatCACTAAGTTTCGAGAACAGTCAAGACTTCATTTTAGATTACGCACAGGCAG
CCCTATTGCAAGCCATCGGCGTTGGGTATCAGCAAAATCAGCAATAATGCTCGCCAACAT
CTTCCAGCAGACCCGGCTCGCTGGGCGGCAAATGCAGCGCGCGGCCGTCCGGTCCAGCCA
CGGCCGTGTGCAGGTGGTGACCCGGGCCATCGCCGTGGGCCAGAAGCTGCCAGAGGGGAA
GTTTAAGTACTTTGATGGCGAGGGCCAGATGCGCGATGTGACCACGGACGAGCTCTGTAA
AGGCAAGAAGGTTGTGCTGTTCGCGGTACCGGGCGCCTTCACGCCCACCTGCTCGCTGAA
GCACGTGCCGGGCTTCGTGGACAAGGCGGATGAGTTCAAGACCAAGGGCGTGGACACGAT
TGCGTGCGTGTCCGTAAACGACGCGTTCGTGATGGCGGCGTGGGGCAAGGACCTGAAGGC
GGGCGACAAGGTGCTCATGCTGGCTGACGGCAACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002898A_C01 KCC002898A_c01
         (515 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA82377.1| ESTs AU070372(S13446),AU075541(S0353) correspond...   138  5e-32
ref|NP_190864.1| peroxiredoxin - like protein [Arabidopsis thali...   137  6e-32
gb|AAK92817.1| putative peroxiredoxin protein [Arabidopsis thali...   136  2e-31
gb|AAP34571.1| thioredoxin peroxidase 1 [Lycopersicon esculentum]     130  1e-29
gb|AAL90751.1| peroxiredoxin [Populus tremula x Populus tremuloi...   130  1e-29

>dbj|BAA82377.1| ESTs AU070372(S13446),AU075541(S0353) correspond to a region of the
           predicted gene.~Similar to Arabidopsis thaliana BAC
           genomic sequence. (AC002292) [Oryza sativa (japonica
           cultivar-group)]
          Length = 225

 Score =  138 bits (347), Expect = 5e-32
 Identities = 75/154 (48%), Positives = 99/154 (63%), Gaps = 4/154 (2%)
 Frame = +2

Query: 65  IASHRRWVSAKSAIMLAN--IFQQTRLAGRQMQRAAVRSSHGRVQVVTRAIAVGQKLPEG 238
           + S +R++++  ++  ++  +    R AG +    A R S      V   IAVG KLP+ 
Sbjct: 17  VTSGKRFITSSFSLSFSSRPLATGVRAAGAR----AARRSAASASTVVATIAVGDKLPDA 72

Query: 239 KFKYFD-GEGQMRDVTTDELCKGKKVVLFAVPGAFTPTCSLKHVPGFVDKADEFKTKGVD 415
              YFD  +G+++ VT  EL  G+K VLFAVPGAFTPTCS KH+PGF++KA E   KGVD
Sbjct: 73  TLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVD 132

Query: 416 TIACVSVNDAFVMAAWGKDLKAGD-KVLMLADGN 514
            IACVSVNDAFVM AW + L  GD  VL+L+DGN
Sbjct: 133 AIACVSVNDAFVMRAWKESLGLGDADVLLLSDGN 166

>ref|NP_190864.1| peroxiredoxin - like protein [Arabidopsis thaliana]
           gi|11358610|pir||T47553 peroxiredoxin-like protein -
           Arabidopsis thaliana gi|7529720|emb|CAB86900.1|
           peroxiredoxin-like protein [Arabidopsis thaliana]
           gi|15451116|gb|AAK96829.1| peroxiredoxin-like protein
           [Arabidopsis thaliana] gi|18377484|gb|AAL66908.1|
           peroxiredoxin-like protein [Arabidopsis thaliana]
           gi|23297326|gb|AAN12942.1| putative peroxiredoxin
           [Arabidopsis thaliana]
          Length = 234

 Score =  137 bits (346), Expect = 6e-32
 Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
 Frame = +2

Query: 134 RLAGRQMQRAAVRSSHGRVQVVTRAIAVGQKLPEGKFKYFD-GEGQMRDVTTDELCKGKK 310
           +   R+   A+  +       VT +I+VG KLP+    Y D   G ++ VT   L  GKK
Sbjct: 48  KFRNRRTNSASATTRSFATTPVTASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKK 107

Query: 311 VVLFAVPGAFTPTCSLKHVPGFVDKADEFKTKGVDTIACVSVNDAFVMAAWGKDLKAGDK 490
            +LFAVPGAFTPTCS KHVPGFV KA E ++KG+D IAC+SVNDAFVM AW KDL   D+
Sbjct: 108 TILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDE 167

Query: 491 VLMLADGN 514
           V++L+DGN
Sbjct: 168 VMLLSDGN 175

>gb|AAK92817.1| putative peroxiredoxin protein [Arabidopsis thaliana]
          Length = 234

 Score =  136 bits (342), Expect = 2e-31
 Identities = 66/128 (51%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
 Frame = +2

Query: 134 RLAGRQMQRAAVRSSHGRVQVVTRAIAVGQKLPEGKFKYFD-GEGQMRDVTTDELCKGKK 310
           +   R+   A+  +       VT +I+VG KLP+    Y D   G ++ VT   L  GKK
Sbjct: 48  KFRNRRTNSASATTRSFATTPVTASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKK 107

Query: 311 VVLFAVPGAFTPTCSLKHVPGFVDKADEFKTKGVDTIACVSVNDAFVMAAWGKDLKAGDK 490
            +LFAVPGAFTPTCS KHVPGFV K  E ++KG+D IAC+SVNDAFVM AW KDL   D+
Sbjct: 108 TILFAVPGAFTPTCSQKHVPGFVSKVGELRSKGIDVIACISVNDAFVMEAWRKDLGINDE 167

Query: 491 VLMLADGN 514
           V++L+DGN
Sbjct: 168 VMLLSDGN 175

>gb|AAP34571.1| thioredoxin peroxidase 1 [Lycopersicon esculentum]
          Length = 162

 Score =  130 bits (327), Expect = 1e-29
 Identities = 61/101 (60%), Positives = 73/101 (71%)
 Frame = +2

Query: 209 IAVGQKLPEGKFKYFDGEGQMRDVTTDELCKGKKVVLFAVPGAFTPTCSLKHVPGFVDKA 388
           IAVG  +P+G   YFD + QM+ V+   L KGKKV++FAVPGAFTPTCS+KHVPGF++KA
Sbjct: 4   IAVGDVIPDGTVSYFDEQDQMQTVSVYSLAKGKKVIIFAVPGAFTPTCSMKHVPGFIEKA 63

Query: 389 DEFKTKGVDTIACVSVNDAFVMAAWGKDLKAGDKVLMLADG 511
            E K+KGVD I C+SVND FVM AW K       V  LADG
Sbjct: 64  AELKSKGVDEILCISVNDPFVMKAWAKTYPENKHVKFLADG 104

>gb|AAL90751.1| peroxiredoxin [Populus tremula x Populus tremuloides]
          Length = 162

 Score =  130 bits (326), Expect = 1e-29
 Identities = 61/102 (59%), Positives = 73/102 (70%)
 Frame = +2

Query: 209 IAVGQKLPEGKFKYFDGEGQMRDVTTDELCKGKKVVLFAVPGAFTPTCSLKHVPGFVDKA 388
           IAVG  LP+GK  YFD + Q+++V+   L  GKKV+LF VPGAFTPTCSLKHVPGF++KA
Sbjct: 4   IAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKA 63

Query: 389 DEFKTKGVDTIACVSVNDAFVMAAWGKDLKAGDKVLMLADGN 514
            E K+KGV  I C+SVND FVM AW K       V  LADG+
Sbjct: 64  GELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGS 105



EST assemble image


clone accession position
1 LC060e06_r AV623212 1 509
2 MX020g05_r BP086932 10 393
3 MX033f01_r BP087392 23 413
4 LC040e10_r AV621758 31 515




Chlamydomonas reinhardtii
Kazusa DNA Research Institute