Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002895A_C01 KCC002895A_c01
(493 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_637927.1| reductase [Xanthomonas campestris pv. campestri... 33 2.5
ref|NP_464871.1| similar to B. subtilis comG operon protein 2 [L... 32 5.5
>ref|NP_637927.1| reductase [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|21113747|gb|AAM41851.1| reductase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 456
Score = 32.7 bits (73), Expect = 2.5
Identities = 15/36 (41%), Positives = 25/36 (68%)
Frame = -3
Query: 464 HVILSTGAHEVKMNLTYMGAKHEHLLLSLFNLTCHA 357
H++++TGAH ++ ++ GA+H H+ FNL CHA
Sbjct: 136 HIVIATGAHPLRPHVE--GAEHGHVSDDFFNL-CHA 168
>ref|NP_464871.1| similar to B. subtilis comG operon protein 2 [Listeria
monocytogenes EGD-e] gi|25513917|pir||AB1243 B. subtilis
comG operon protein 2 homolog comGB [imported] -
Listeria monocytogenes (strain EGD-e)
gi|16410762|emb|CAC99424.1| comGB [Listeria
monocytogenes]
Length = 343
Score = 31.6 bits (70), Expect = 5.5
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -3
Query: 434 VKMNLTYMGAKHEHLLLSLFNLTCHASYTFILRTAPNQ---DSVTLNVMMDQWNVATRAH 264
V N TY + +LL +F L+ ++FI+R + D + +R H
Sbjct: 149 VGTNFTYFLLEKVPILLGIFLLSLFLIFSFIIRKQKQKNAYDRAYFYCRIPYIRQFSRIH 208
Query: 263 FSQYNTRDCGILCRLLFLIDH 201
+SQY +R+ G L + I H
Sbjct: 209 YSQYLSRELGYLLKSGLSITH 229
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,717,766
Number of Sequences: 1537769
Number of extensions: 9420353
Number of successful extensions: 19839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19838
length of database: 498,525,298
effective HSP length: 114
effective length of database: 323,219,632
effective search space used: 15837761968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
