KCC002893A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002893A_C01 KCC002893A_c01
tgCAACTGTAAGGCTGGTTATTGAACACAACAAGTTCAGCGCGGCAATAGTCCCCAAACC
CTACCTGTTCAAAGGCCTGCAAACGCGCTCCGAGACCCTAATTACGCATTTTCAAACCTC
ACTTGTAAAGTATCATACGCATACTGTCCACTATGCAATCTCTCCTGAACGGCCGGGTCG
GCATGCGCACGTCAACGGCGTCGCGGCGCTGCTCAGCAGCGCTGCGCCGGCCCGTTGACC
GGAGCTATGCTGTGCGCACAGCGGCGCTGTACCACAACCCAGGGCCCCGCGACAGCGGGA
AAGCCAAGGCCGCGGGCGCGGCCGTCGAGACCATACTCAAGCTCGTTGCCGCAGGCGACC
GGGAGGCCCTGTGTGACTACTTTGCGACCTCCAACCTCACGGATGCGCCAACACTGAAGC
TGGCAAGTGGATGCGAAGTCGTCGTGTTTGAAGACGTGATGGAATCGATGATGCTCCGAG
AGCCCTCGCGCCACTTTCTGGATTCCTACGCTATCCGGCACTTGATCCTCAACGCACCGG
CATCCAAGCAGACGCTTTCGGGGCTGATGCTGGGGCCCAACAAGTACGTGCAGCGCATGT
CTGTCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002893A_C01 KCC002893A_c01
         (607 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM92801.1| hypothetical protein [Oryza sativa (japonica cult...    42  0.009
ref|NP_643836.1| iron receptor [Xanthomonas axonopodis pv. citri...    41  0.012
ref|XP_321223.1| ENSANGP00000020069 [Anopheles gambiae] gi|21289...    37  0.22
pir||I47109 high-sulfur wool matrix protein B2C - sheep gi|94035...    37  0.22
pir||I47112 high-sulfur wool matrix protein B2C - sheep gi|94036...    37  0.22

>gb|AAM92801.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|31430609|gb|AAP52497.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.009
 Identities = 31/93 (33%), Positives = 44/93 (46%), Gaps = 9/93 (9%)
 Frame = +1

Query: 148 PLCNLS*TAGSACARQRRRG---------AAQQRCAGPLTGAMLCAQRRCTTTQGPATAG 300
           PL +L  +  +   RQ RRG         A  +RC      ++  ++RR   T+ P   G
Sbjct: 3   PLLHLPPSTRATRQRQVRRGHASSRRLSRAPSRRCPAARPASVAPSRRRPVPTRRPCRVG 62

Query: 301 KPRPRARPSRPYSSSLPQATGRPCVTTLRPPTS 399
           +P PRA  SRP ++SL  A+ RP      PP S
Sbjct: 63  RPPPRA-SSRPVAASL--ASSRPAAVDAPPPPS 92

>ref|NP_643836.1| iron receptor [Xanthomonas axonopodis pv. citri str. 306]
           gi|21109898|gb|AAM38372.1| iron receptor [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.012
 Identities = 48/161 (29%), Positives = 62/161 (37%), Gaps = 2/161 (1%)
 Frame = +1

Query: 124 CKVSYAYCPLCNLS*TAGSAC--ARQRRRGAAQQRCAGPLTGAMLCAQRRCTTTQGPATA 297
           C+++ A C   N +  A ++   AR + R   +QRC         C+ R  T    PAT 
Sbjct: 447 CRLARAMCNWTNAASIATASWNDARAKTRCCRRQRC---------CSSRSRTCRCMPATP 497

Query: 298 GKPRPRARPSRPYSSSLPQATGRPCVTTLRPPTSRMRQH*SWQVDAKSSCLKT*WNR*CS 477
              RP AR        LP    R C    RPP   MR   SW+   +S+C    W R CS
Sbjct: 498 RAWRPAAR-----RRGLPITPTRSC----RPP---MRT--SWKPAQRSTCRACAWARHCS 543

Query: 478 ESPRATFWIPTLSGT*SSTHRHPSRRFRG*CWGPTSTCSAC 600
            S R T                P+RR       P + CS C
Sbjct: 544 TSARLT--------------SSPNRR-------PMAVCSTC 563

>ref|XP_321223.1| ENSANGP00000020069 [Anopheles gambiae] gi|21289218|gb|EAA01511.1|
           ENSANGP00000020069 [Anopheles gambiae str. PEST]
          Length = 260

 Score = 37.0 bits (84), Expect = 0.22
 Identities = 31/82 (37%), Positives = 34/82 (40%), Gaps = 16/82 (19%)
 Frame = +2

Query: 170 RPGRHAHVNGVAALLSSAAPAR*PELCCAHSGAVPQP--------------RAPRQRESQ 307
           RP R A  +  AA+     P   P    A SG V  P              RAP  R+  
Sbjct: 158 RPARAAPKSAAAAVALLLPPVPAPVPSAAGSGRVRLPGAPSPPEGVRGDHGRAPAGRDGS 217

Query: 308 GRGRGRRDHTQARCRR--RPGG 367
           GR RGRR     RCRR  RPGG
Sbjct: 218 GRWRGRR--RSGRCRRFLRPGG 237

>pir||I47109 high-sulfur wool matrix protein B2C - sheep
           gi|940359|gb|AAB01448.1| high-sulphur wool matrix
           protein B2C
          Length = 152

 Score = 37.0 bits (84), Expect = 0.22
 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 19/110 (17%)
 Frame = +1

Query: 124 CKVSYAYCPLCNLS*TAGSACARQRRRGAAQQRCAGPLTGAMLCAQRRCTTTQGPAT--- 294
           C  S+   P+C+ + T GS+C R      +Q  C  P +    C Q  C  T G  T   
Sbjct: 4   CSTSFCGFPICSTAGTCGSSCCRST---CSQTSCCQPTSIQTSCCQPTCLQTSGCETGCG 60

Query: 295 ------------AGKPRPRARPSRP----YSSSLPQATGRPCVTTLRPPT 396
                       +G    R R  RP      +SLP      CV +  PP+
Sbjct: 61  IGGSTGYGQVGSSGAVSSRTRWCRPDCRVEGTSLPPC----CVVSCTPPS 106

>pir||I47112 high-sulfur wool matrix protein B2C - sheep
           gi|940362|gb|AAB01451.1| high-sulphur wool matrix
           protein B2C
          Length = 152

 Score = 37.0 bits (84), Expect = 0.22
 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 19/110 (17%)
 Frame = +1

Query: 124 CKVSYAYCPLCNLS*TAGSACARQRRRGAAQQRCAGPLTGAMLCAQRRCTTTQGPAT--- 294
           C  S+   P+C+ + T GS+C R      +Q  C  P +    C Q  C  T G  T   
Sbjct: 4   CSTSFCGFPICSTAGTCGSSCCRST---CSQTSCCQPTSIQTSCCQPTCLQTSGCETGCG 60

Query: 295 ------------AGKPRPRARPSRP----YSSSLPQATGRPCVTTLRPPT 396
                       +G    R R  RP      +SLP      CV +  PP+
Sbjct: 61  IGGSIGYGQVGSSGAVSSRTRWCRPDCRVEGTSLPPC----CVVSCTPPS 106



EST assemble image


clone accession position
1 LC039a10_r AV621649 1 458
2 LCL011c01_r AV626555 3 327
3 LCL071e11_r AV630031 9 373
4 MX203d06_r BP089232 16 244
5 LCL100c07_r AV631816 128 607




Chlamydomonas reinhardtii
Kazusa DNA Research Institute