KCC002892A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC002892A_C01 KCC002892A_c01
GCGAGATTTGAGTCGACAGCGTCTGCTATACTAATCAGCGCGTTGCCTGAAACAGATAGC
GACAACTTCACTTCATACCTTTGCGCTCGTTTAACCGAAGGAACTTTCAAGCACTAGCTT
AAGCCTGCTGAATAACTATTCCCTAGACACAACATCTGCCCACACATAGCTTCAACCAGC
GGACGCAGCAGGATGACCATCGCACAGAAGTTGCCAGCGCTTTCGGCAGTCGCGAACGCG
GTATTAAAATCGCCTGAGGGAGCGGAGGTGGTTGCCAAGACGCTTTGGGCGTCGCAGCCA
GTCGCTGTGCTGGTGCTCCGACGACCAGGCTGCGTGCTATGTCGCGACGAGGCCCAGAGG
CTGTGGGCGCTCAAGCCCGAGTTCGACAAGCTCGGCGTGGGCCTGGTGTGCGTGGTGCAC
GAATGGATTCAGCGCGAGATTGACGCCTTCGCCCCCGCCTTCTGGCCCGGGCCGCTCTTC
CATGACACCTCCAAGTTCTTCTACGCAGCCCTC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002892A_C01 KCC002892A_c01
(513 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_081740.2| RIKEN cDNA 5730469M10 [Mus musculus] gi|2638333... 75 6e-13
ref|XP_341407.1| similar to RIKEN cDNA 5730469M10 [Rattus norveg... 74 8e-13
dbj|BAC11627.1| unnamed protein product [Homo sapiens] 68 6e-11
gb|AAH05871.2| Unknown (protein for MGC:4248) [Homo sapiens] 68 6e-11
gb|AAQ89418.1| SFLQ611 [Homo sapiens] 68 6e-11
>ref|NP_081740.2| RIKEN cDNA 5730469M10 [Mus musculus] gi|26383338|dbj|BAB30875.2|
unnamed protein product [Mus musculus]
gi|34785297|gb|AAH56635.1| RIKEN cDNA 5730469M10 [Mus
musculus]
Length = 218
Score = 74.7 bits (182), Expect = 6e-13
Identities = 36/77 (46%), Positives = 49/77 (62%)
Frame = +1
Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
AK LW ++ +RRPGC LCR EA L +LKP+ D+LGV L VV E ++RE++ F
Sbjct: 55 AKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEQVKREVEDFQ 114
Query: 454 PAFWPGPLFHDTSKFFY 504
P ++ G +F D K FY
Sbjct: 115 P-YFKGEIFLDEKKKFY 130
>ref|XP_341407.1| similar to RIKEN cDNA 5730469M10 [Rattus norvegicus]
Length = 353
Score = 74.3 bits (181), Expect = 8e-13
Identities = 36/77 (46%), Positives = 49/77 (62%)
Frame = +1
Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
AK LW ++ +RRPGC LCR EA L +LKP+ D+LGV L VV E ++RE++ F
Sbjct: 190 AKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEKVKREVEDFQ 249
Query: 454 PAFWPGPLFHDTSKFFY 504
P ++ G +F D K FY
Sbjct: 250 P-YFKGEIFLDEKKKFY 265
>dbj|BAC11627.1| unnamed protein product [Homo sapiens]
Length = 218
Score = 68.2 bits (165), Expect = 6e-11
Identities = 35/77 (45%), Positives = 46/77 (59%)
Frame = +1
Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
AK LW ++ +RRPGC LCR+EA L +LK D+LGV L VV E I+ E+ F
Sbjct: 55 AKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQ 114
Query: 454 PAFWPGPLFHDTSKFFY 504
P ++ G +F D K FY
Sbjct: 115 P-YFKGEIFLDEKKKFY 130
>gb|AAH05871.2| Unknown (protein for MGC:4248) [Homo sapiens]
Length = 218
Score = 68.2 bits (165), Expect = 6e-11
Identities = 35/77 (45%), Positives = 46/77 (59%)
Frame = +1
Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
AK LW ++ +RRPGC LCR+EA L +LK D+LGV L VV E I+ E+ F
Sbjct: 55 AKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQ 114
Query: 454 PAFWPGPLFHDTSKFFY 504
P ++ G +F D K FY
Sbjct: 115 P-YFKGEIFLDEKKKFY 130
>gb|AAQ89418.1| SFLQ611 [Homo sapiens]
Length = 229
Score = 68.2 bits (165), Expect = 6e-11
Identities = 35/77 (45%), Positives = 46/77 (59%)
Frame = +1
Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
AK LW ++ +RRPGC LCR+EA L +LK D+LGV L VV E I+ E+ F
Sbjct: 66 AKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQ 125
Query: 454 PAFWPGPLFHDTSKFFY 504
P ++ G +F D K FY
Sbjct: 126 P-YFKGEIFLDEKKKFY 141
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
LC064c08_r |
AV623474 |
1 |
609 |
2 |
MX231f03_r |
BP090955 |
13 |
415 |
3 |
MX211d08_r |
BP089651 |
32 |
456 |
4 |
MX013d04_r |
BP086635 |
79 |
468 |
5 |
LC089c11_r |
AV625210 |
88 |
593 |
6 |
LC038b11_r |
AV621591 |
115 |
524 |
7 |
MX213e02_r |
BP089760 |
154 |
463 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute