Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002890A_C01 KCC002890A_c01
(474 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568821.1| ribosomal protein L30p family [Arabidopsis thal... 74 7e-13
dbj|BAB08583.1| contains similarity to 50S ribosomal protein L30... 54 7e-07
ref|NP_241018.1| 50S ribosomal protein L30; ribosomal protein L3... 50 1e-05
pir||R5BS3F ribosomal protein L30 - Bacillus stearothermophilus 47 9e-05
sp|P02431|RL30_BACST 50S ribosomal protein L30 47 9e-05
>ref|NP_568821.1| ribosomal protein L30p family [Arabidopsis thaliana]
gi|21617966|gb|AAM67016.1| unknown [Arabidopsis
thaliana]
Length = 109
Score = 74.3 bits (181), Expect = 7e-13
Identities = 42/104 (40%), Positives = 61/104 (58%)
Frame = +2
Query: 149 AMATEGSVQAVKSLFVTLRRGFAGTPWFHRRVLESLGLKYRHQCVEKPNNSSIRGMLSKV 328
A + ++ +SL++TL RG GT HRR LE++GL+ H+ V NNSSIRGM+ +V
Sbjct: 6 AFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGMIDQV 65
Query: 329 PHLVVIETDRMRYLRELKEHYQQLPREPWVLHHDPPLPAANPSN 460
+VV+ET+ M R+ E + R P V+ H PA + SN
Sbjct: 66 KRMVVVETEEMYNARKEAEANHKALRPPLVVSHSS--PATDSSN 107
>dbj|BAB08583.1| contains similarity to 50S ribosomal protein L30~gene_id:MCO15.9
[Arabidopsis thaliana]
Length = 77
Score = 54.3 bits (129), Expect = 7e-07
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +2
Query: 149 AMATEGSVQAVKSLFVTLRRGFAGTPWFHRRVLESLGLKYRHQCVEKPNNSSIRGMLSKV 328
A + ++ +SL++TL RG GT HRR LE++GL+ H+ V NNSSIRGM+ +V
Sbjct: 6 AFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGMIDQV 65
>ref|NP_241018.1| 50S ribosomal protein L30; ribosomal protein L30 [Bacillus
halodurans] gi|7674289|sp|Q9Z9J6|RL30_BACHD 50S
ribosomal protein L30 gi|11276874|pir||T44401 ribosomal
protein L30 rpmD [imported] - Bacillus halodurans
(strain C-125) gi|4512422|dbj|BAA75289.1| rpmD homologue
(identity of 82% to B. subtilis ) [Bacillus halodurans]
gi|10172764|dbj|BAB03871.1| 50S ribosomal protein L30
[Bacillus halodurans]
Length = 62
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/56 (42%), Positives = 36/56 (63%)
Frame = +2
Query: 182 KSLFVTLRRGFAGTPWFHRRVLESLGLKYRHQCVEKPNNSSIRGMLSKVPHLVVIE 349
K L +TL R G P R + +LGL+ HQ V + +N++IRGM++KV HLV ++
Sbjct: 3 KKLEITLTRSLIGRPQDQRVTVNTLGLRKMHQTVVQEDNAAIRGMVNKVSHLVTVK 58
>pir||R5BS3F ribosomal protein L30 - Bacillus stearothermophilus
Length = 62
Score = 47.4 bits (111), Expect = 9e-05
Identities = 24/56 (42%), Positives = 34/56 (59%)
Frame = +2
Query: 182 KSLFVTLRRGFAGTPWFHRRVLESLGLKYRHQCVEKPNNSSIRGMLSKVPHLVVIE 349
K L +TL R G P R + +LGL+ HQ V +N +IRGM++KV HLV ++
Sbjct: 2 KKLAITLTRSVIGRPEDQRITVRTLGLRKMHQTVVHNDNPAIRGMINKVAHLVKVK 57
>sp|P02431|RL30_BACST 50S ribosomal protein L30
Length = 63
Score = 47.4 bits (111), Expect = 9e-05
Identities = 24/56 (42%), Positives = 34/56 (59%)
Frame = +2
Query: 182 KSLFVTLRRGFAGTPWFHRRVLESLGLKYRHQCVEKPNNSSIRGMLSKVPHLVVIE 349
K L +TL R G P R + +LGL+ HQ V +N +IRGM++KV HLV ++
Sbjct: 3 KKLAITLTRSVIGRPEDQRITVRTLGLRKMHQTVVHNDNPAIRGMINKVAHLVKVK 58
