Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002885A_C01 KCC002885A_c01
(490 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00059470.1| COG4214: ABC-type xylose transport system, pe... 37 0.13
ref|ZP_00054653.1| COG1529: Aerobic-type carbon monoxide dehydro... 35 0.64
emb|CAE01953.1| OSJNBa0073L13.25 [Oryza sativa (japonica cultiva... 34 0.83
ref|ZP_00092405.1| COG1538: Outer membrane protein [Azotobacter ... 34 1.1
gb|AAM62833.1| putative zinc finger protein [Arabidopsis thaliana] 33 1.4
>ref|ZP_00059470.1| COG4214: ABC-type xylose transport system, permease component
[Thermobifida fusca]
Length = 616
Score = 37.0 bits (84), Expect = 0.13
Identities = 31/113 (27%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Frame = +3
Query: 96 PSCHMRASSSPALLY*MPIRQAFQQVKHANA------ARIACQLHCHPAELFLARRSACP 257
P RA S PA P+R+A +H R A + HC P
Sbjct: 63 PGLAFRADSQPAHSRCCPLRRAAPDHRHRPLPARRPQGRHAGRAHCSPGR---------- 112
Query: 258 AFASSRSISLAEIHVPTRSKAKLEPHTPQRRRAASKCASRLYLLATNRRRALP 416
+ S P R + + PH PQ R AS C R +RR LP
Sbjct: 113 ---GADRASTRPHRTPPRPRPRSHPHQPQHGRRASCCRPRCRAAPGTQRRRLP 162
>ref|ZP_00054653.1| COG1529: Aerobic-type carbon monoxide dehydrogenase, large subunit
CoxL/CutL homologs [Magnetospirillum magnetotacticum]
Length = 835
Score = 34.7 bits (78), Expect = 0.64
Identities = 30/95 (31%), Positives = 41/95 (42%)
Frame = +3
Query: 72 LPADTCLVPSCHMRASSSPALLY*MPIRQAFQQVKHANAARIACQLHCHPAELFLARRSA 251
+ DT L P A S+ M IRQA + A + A +L P EL L A
Sbjct: 197 IEGDTALTPDQGPTAGSTGVAKGGMQIRQAAATARQALISLAAPRLELAPEELDLLD-GA 255
Query: 252 CPAFASSRSISLAEIHVPTRSKAKLEPHTPQRRRA 356
+ RSI+L ++ + KL+P P RR A
Sbjct: 256 VVSKTGGRSIALGDLIGESGFSLKLDPKAPLRRPA 290
>emb|CAE01953.1| OSJNBa0073L13.25 [Oryza sativa (japonica cultivar-group)]
Length = 511
Score = 34.3 bits (77), Expect = 0.83
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 TSPRVLKQSWSPTRPSADVPPASARHVSIYWQPIDA-VRCRSITHQRSVH 444
T R K + +PT PS P ASA VS W+ + + + CRS T VH
Sbjct: 85 TGHRPKKAAAAPTTPSRGAPSASAAPVSSSWEQLKSLLSCRSATAAARVH 134
>ref|ZP_00092405.1| COG1538: Outer membrane protein [Azotobacter vinelandii]
Length = 817
Score = 33.9 bits (76), Expect = 1.1
Identities = 24/68 (35%), Positives = 34/68 (49%)
Frame = -2
Query: 291 RQGKSSARKQTPGTRCDVQGIALQDGNAVGRRSALRSRVSPAGTPALWAFSTRGREMRMP 112
R+G+++A ++ PG G+A + GRR A R+R+ P GT AL RE R P
Sbjct: 79 RRGRAAADRRRPGAA----GLAHRRRAGQGRRGAGRTRLRPPGTEAL-------REPRQP 127
Query: 111 AYDMTARG 88
A G
Sbjct: 128 GRRQPATG 135
>gb|AAM62833.1| putative zinc finger protein [Arabidopsis thaliana]
Length = 367
Score = 33.5 bits (75), Expect = 1.4
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = +1
Query: 268 PRARFPLPKYTSPRVLKQSWSPTRPSADVPPASARHVSIYWQPIDAVRCRSIT 426
P R P P + P Q W P P+ VPPA+ H+ QP+ V+ +T
Sbjct: 147 PPMRHPAPVWQMPPPRPQQWYPQNPALSVPPAA--HLGYRPQPLFPVQNMGMT 197
