KCC002884A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002884A_C01 KCC002884A_c01
ccagagccacatgctggagaatgtgcaggtgcagtcggaccccatcgccgccgccgacgg
cgcgcacgccaTCTGCGTGCTGACTGAGTGGGACGAGTTCAAGCACTACGACTATGCGGC
GCTGTACGAGAAGATGGTCAAGCCCGCCTTCATCTTTGATGGCCGCAACATCCTGGACCA
CGCCAAGCTGCGCGAGATCGGCTTCATCGTCTACGCCCTGGGCAAGCCCCTGGACCCCTT
CCTGGTCAAGGGCTATTAAGCGGCGCGCGGCGAGGGAGGCAGCATCAGTGGCGAGCGGCG
CTGGTGCGCGGCGGCTGCAGCCGGCGGAGAGGGACGCTCTGGGCTTTGAGCTGCTGTTGG
CGCGTGTGGAGCTGCGTAGGAGCACATAGCTGGAGCTAGGGTCTGGAGCAGGAGGTTACT
GTAGCTGCGACATTAGTAGGAATAGCAGGTAACGGTGAGGTTAGGCGATTCACCGCCTAC
GGCGAGACGCGGACACAGTGCATTCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002884A_C01 KCC002884A_c01
         (507 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP21188.1| At5g39320 [Arabidopsis thaliana]                       104  7e-22
ref|NP_198748.1| UDP-glucose dehydrogenase-related protein [Arab...   104  7e-22
gb|AAF04455.1|AF053973_1 UDP-glucose dehydrogenase [Populus trem...   103  1e-21
ref|NP_173979.1| UDP-glucose dehydrogenase -related [Arabidopsis...   103  2e-21
gb|AAM61009.1| UDP-glucose dehydrogenase, putative [Arabidopsis ...   103  2e-21

>gb|AAP21188.1| At5g39320 [Arabidopsis thaliana]
          Length = 479

 Score =  104 bits (259), Expect = 7e-22
 Identities = 48/77 (62%), Positives = 59/77 (76%)
 Frame = +2

Query: 14  LENVQVQSDPIAAADGAHAICVLTEWDEFKHYDYAALYEKMVKPAFIFDGRNILDHAKLR 193
           ++ V V  D   A   AHA+CVLTEWDEFK  DY  +++ M KPAFIFDGRNI++  KLR
Sbjct: 396 VKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLR 455

Query: 194 EIGFIVYALGKPLDPFL 244
           EIGFIVY++GKPLDP+L
Sbjct: 456 EIGFIVYSIGKPLDPWL 472

>ref|NP_198748.1| UDP-glucose dehydrogenase-related protein [Arabidopsis thaliana]
          Length = 480

 Score =  104 bits (259), Expect = 7e-22
 Identities = 48/77 (62%), Positives = 59/77 (76%)
 Frame = +2

Query: 14  LENVQVQSDPIAAADGAHAICVLTEWDEFKHYDYAALYEKMVKPAFIFDGRNILDHAKLR 193
           ++ V V  D   A   AHA+CVLTEWDEFK  DY  +++ M KPAFIFDGRNI++  KLR
Sbjct: 397 VKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLR 456

Query: 194 EIGFIVYALGKPLDPFL 244
           EIGFIVY++GKPLDP+L
Sbjct: 457 EIGFIVYSIGKPLDPWL 473

>gb|AAF04455.1|AF053973_1 UDP-glucose dehydrogenase [Populus tremula x Populus tremuloides]
          Length = 481

 Score =  103 bits (257), Expect = 1e-21
 Identities = 47/80 (58%), Positives = 59/80 (73%)
 Frame = +2

Query: 5   SHMLENVQVQSDPIAAADGAHAICVLTEWDEFKHYDYAALYEKMVKPAFIFDGRNILDHA 184
           S  +E V V SD   A   AH +C+LTEWDEFK  DY  +Y+ M KPAF+FDGRN+++  
Sbjct: 395 SSAVEQVTVTSDAYEATKEAHGVCILTEWDEFKTLDYNKIYDNMQKPAFVFDGRNVVNAD 454

Query: 185 KLREIGFIVYALGKPLDPFL 244
           KLREIGFIVY++GKPLD +L
Sbjct: 455 KLREIGFIVYSIGKPLDAWL 474

>ref|NP_173979.1| UDP-glucose dehydrogenase -related [Arabidopsis thaliana]
           gi|25283960|pir||G86392 T1K7.6 protein - Arabidopsis
           thaliana gi|9797743|gb|AAF98561.1|AC013427_4 Strong
           similarity to UDP-Glucose 6-Dehydrogenase from Glycine
           max gb|6136119 and is a member of the
           UDP-glucose/GDP-mannose dehydrogenase PF|00984 family.
           ESTs gb|AV566422, gb|AV555903 come from this gene.
           [Arabidopsis thaliana] gi|17979522|gb|AAL50096.1|
           At1g26570/T1K7_6 [Arabidopsis thaliana]
           gi|23506003|gb|AAN28861.1| At1g26570/T1K7_6 [Arabidopsis
           thaliana]
          Length = 481

 Score =  103 bits (256), Expect = 2e-21
 Identities = 46/76 (60%), Positives = 57/76 (74%)
 Frame = +2

Query: 17  ENVQVQSDPIAAADGAHAICVLTEWDEFKHYDYAALYEKMVKPAFIFDGRNILDHAKLRE 196
           E V V SD   A   AH +CVLTEWDEFK  D+  +++ M KPAF+FDGRN++D  KLRE
Sbjct: 399 EQVNVVSDAYEATKDAHGLCVLTEWDEFKSLDFKKIFDNMQKPAFVFDGRNVVDAVKLRE 458

Query: 197 IGFIVYALGKPLDPFL 244
           IGFIVY++GKPLD +L
Sbjct: 459 IGFIVYSIGKPLDSWL 474

>gb|AAM61009.1| UDP-glucose dehydrogenase, putative [Arabidopsis thaliana]
          Length = 481

 Score =  103 bits (256), Expect = 2e-21
 Identities = 46/76 (60%), Positives = 57/76 (74%)
 Frame = +2

Query: 17  ENVQVQSDPIAAADGAHAICVLTEWDEFKHYDYAALYEKMVKPAFIFDGRNILDHAKLRE 196
           E V V SD   A   AH +CVLTEWDEFK  D+  +++ M KPAF+FDGRN++D  KLRE
Sbjct: 399 EQVNVVSDAYEATKDAHGLCVLTEWDEFKSLDFKKIFDNMQKPAFVFDGRNVVDAVKLRE 458

Query: 197 IGFIVYALGKPLDPFL 244
           IGFIVY++GKPLD +L
Sbjct: 459 IGFIVYSIGKPLDSWL 474



EST assemble image


clone accession position
1 LCL095d07_r AV631515 1 507
2 LC035h02_r AV621420 72 341




Chlamydomonas reinhardtii
Kazusa DNA Research Institute