Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002883A_C01 KCC002883A_c01
(673 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177783.1| light-harvesting chlorophyll a/b binding protei... 224 7e-58
gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiell... 169 3e-41
sp|P12470|CB25_NICPL Chlorophyll A-B binding protein E, chloropl... 165 7e-40
sp|P12333|CB21_SPIOL Chlorophyll A-B binding protein, chloroplas... 164 1e-39
sp|P20866|CB2_PHYPA Chlorophyll A-B binding protein, chloroplast... 164 1e-39
>ref|NP_177783.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|25406454|pir||G96793 hypothetical protein
F14G6.17 [imported] - Arabidopsis thaliana
gi|12323973|gb|AAG51944.1|AC015450_5 putative
chlorophyll A-B binding protein; 65434-67056
[Arabidopsis thaliana]
Length = 327
Score = 224 bits (572), Expect = 7e-58
Identities = 110/193 (56%), Positives = 138/193 (70%), Gaps = 1/193 (0%)
Frame = +3
Query: 3 IAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGV-DLGEPVWW 179
+ GD GFD GL K++ +F KY E+LHARWAML +G L+PE+ L G EPVWW
Sbjct: 130 LPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWW 189
Query: 180 KVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGVF 359
+VG SKL + TL + GI G +AG QG+ +IA CQ +LM GPEYARY GI +LEP+G++
Sbjct: 190 RVGYSKLQGE-TLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIY 248
Query: 360 LPGDQNYPGGGPFDPLNYAADADDFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQN 539
LPGD NYPGG FDPLN + D F + VKE+KNGRLAM+A LGF+ QAA T GPVQN
Sbjct: 249 LPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQN 308
Query: 540 VLDFVADPAHNNI 578
++D V+DP HNN+
Sbjct: 309 LVDHVSDPLHNNL 321
>gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 169 bits (429), Expect = 3e-41
Identities = 97/192 (50%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
Frame = +3
Query: 9 GDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALR-GVDLGEPVWWKV 185
GD G+D LGLS + +FA Y+EAELLHARWAMLG +GC+ PE+LA+ GV L EPVW+K
Sbjct: 152 GDYGWDALGLSSDPETFANYREAELLHARWAMLGALGCIFPEILAMNYGVGLEEPVWFKA 211
Query: 186 GASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGVFLP 365
GA LN D ++++ G ++ I IAA Q +LMGG E R G+ P G
Sbjct: 212 GALVLN-DKSIDYLGSP--QLVHASSIIAIAAAQVLLMGGAEAYRASGVA---PNGEEF- 264
Query: 366 GDQNYPGGGPFDPLNYAADADDFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVL 545
D+ +PGG F+PL + D D E VKE+KNGRLAM +MLGF++QAA T GP+QN++
Sbjct: 265 -DKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLAMFSMLGFYIQAATTGNGPLQNLV 323
Query: 546 DFVADPAHNNIF 581
D AD A+ NIF
Sbjct: 324 DHRADAANENIF 335
Score = 33.1 bits (74), Expect = 3.9
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +3
Query: 270 LIAACQAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADDFVEQAV 449
L+ AC V GP+ +++ L V +L G+ YPG +D L ++D + F
Sbjct: 117 LLNACN-VEWYGPDRPKWLPDAFLAGVPDYLTGE--YPGDYGWDALGLSSDPETFANYRE 173
Query: 450 KEVKNGRLAMLAMLG 494
E+ + R AML LG
Sbjct: 174 AELLHARWAMLGALG 188
>sp|P12470|CB25_NICPL Chlorophyll A-B binding protein E, chloroplast precursor (LHCII
type I CAB-E) (LHCP) gi|72736|pir||CDNTEC chlorophyll
a/b-binding protein type I precursor (cab-E) -
curled-leaved tobacco gi|170212|gb|AAA34056.1|
chlorophyll a/b-binding protein-E
Length = 266
Score = 165 bits (417), Expect = 7e-40
Identities = 97/195 (49%), Positives = 123/195 (62%)
Frame = +3
Query: 9 GDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGVDLGEPVWWKVG 188
GD G+D GLS + +FAK +E E++H RWAMLG +GC+ PELLA GV GE VW+K G
Sbjct: 76 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 135
Query: 189 ASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGVFLPG 368
S++ S+ L++ G + Q I I ACQ VLMG E R G EP+G +
Sbjct: 136 -SQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVLMGAVEGYRVAG----EPLGEVV-- 186
Query: 369 DQNYPGGGPFDPLNYAADADDFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVLD 548
D YPGG FDPL A D + F E VKE+KNGRLAM +M GFFVQA VT GP++N+ D
Sbjct: 187 DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLAD 245
Query: 549 FVADPAHNNIFWNLA 593
+ADP +NN W+ A
Sbjct: 246 HLADPVNNNA-WSYA 259
Score = 32.3 bits (72), Expect = 6.6
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +3
Query: 303 GPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADDFVEQAVKEVKNGRLAML 482
GP+ +Y+G S E +L G+ +PG +D +AD + F + EV + R AML
Sbjct: 52 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 483 AMLGFFVQAAVTRVG 527
LG + R G
Sbjct: 109 GALGCVFPELLARNG 123
>sp|P12333|CB21_SPIOL Chlorophyll A-B binding protein, chloroplast precursor (LHCII type
I CAB) (LHCP) gi|81455|pir||JQ0020 chlorophyll
a/b-binding protein precursor - spinach
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein
precursor [Spinacia oleracea]
Length = 267
Score = 164 bits (414), Expect = 1e-39
Identities = 96/195 (49%), Positives = 122/195 (62%)
Frame = +3
Query: 9 GDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGVDLGEPVWWKVG 188
GD G+D GLS + +FAK +E E++H RWAMLG +GC+ PELLA GV GE VW+K G
Sbjct: 77 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 136
Query: 189 ASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGVFLPG 368
S++ S+ L++ G + Q I I ACQ +LMG E R G P+G +
Sbjct: 137 -SQIFSEGGLDYLGNPS--LVHAQSILAIWACQVILMGAVEGYRIAG----GPLGEVV-- 187
Query: 369 DQNYPGGGPFDPLNYAADADDFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVLD 548
D YPGG FDPL A D + F E VKE+KNGRLAM +M GFFVQA VT GP++N+ D
Sbjct: 188 DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 246
Query: 549 FVADPAHNNIFWNLA 593
+ADP +NN WN A
Sbjct: 247 HLADPVNNNA-WNFA 260
Score = 32.3 bits (72), Expect = 6.6
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +3
Query: 303 GPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADDFVEQAVKEVKNGRLAML 482
GP+ +Y+G S E +L G+ +PG +D +AD + F + EV + R AML
Sbjct: 53 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 483 AMLGFFVQAAVTRVG 527
LG + R G
Sbjct: 110 GALGCVFPELLARNG 124
>sp|P20866|CB2_PHYPA Chlorophyll A-B binding protein, chloroplast precursor (LHCII type
I CAB) (LHCP) gi|81414|pir||JS0171 chlorophyll
a/b-binding protein precursor - moss (Physcomitrella
patens) gi|169020|gb|AAA33636.1| major chlorophyll
binding protein
Length = 269
Score = 164 bits (414), Expect = 1e-39
Identities = 97/190 (51%), Positives = 119/190 (62%)
Frame = +3
Query: 6 AGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGVDLGEPVWWKV 185
AGD G+D GLS + +FA+ +E E++HARWAMLG +GCL PELLA GV GE VW+K
Sbjct: 77 AGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKA 136
Query: 186 GASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGVFLP 365
GA ++ S+ L++ G + Q I I ACQ VLMG E R G P+G
Sbjct: 137 GA-QIFSEGGLDYLGNPS--LVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVT- 188
Query: 366 GDQNYPGGGPFDPLNYAADADDFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVL 545
D YPGG FDPL A D D F E VKE+KNGRLAM +M GFFVQA VT GP++N+
Sbjct: 189 -DPIYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLN 246
Query: 546 DFVADPAHNN 575
D +ADP NN
Sbjct: 247 DHLADPVANN 256
