KCC002882A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002882A_C01 KCC002882A_c01
gttgagcagcggtgcccacaagcccgcgtgcagcttcgatcaacatgaactcaaaatttg
caccaaaatggattgcgctgCTTTTGCTAGGACTCTTGCTTCTGCAAGTAGATAGAGTCT
CTGCGAAGGATTACTATGAGCTTCTGCAGGTGCCCAAAGGAGCCAGTGAGGCGCAGCTTA
AGCGCGCGTATCGTAAGCTGGCGCTGCAGTACCACCCGGATAAGGTGACGGGTACGGAGG
ATGAGAAGAAAGTAGCTTCGCAGCGATTTGCGGACATCAACCATGCCTACGAGGTGCTGT
CCGACCCTGAGAAGCGGAAGATCTACGACCAGTACGGCGAGGACGGACTGAAGCAGGCGC
AGCAGCAGGGCGGTGGGCACGGCGGTGGCAACGACCTGTTCAACTTCTTTTTTGGTGGCT
TTGGTGGGGGCCAGCAGGAGGAGGAGGTGCGCAAGGGCCACACCATCTACGTGGACCTCT
ACGTCACCCTGCGCGACCTGTACGTGGGCAAGGAGCTGCAGGTGGTGCGCGACAAGGCTG
TGATCAAGGAGACCAGCGGCACCCGCAAGTGCAACTGCAAGACCAAGATCATGACGCGGC
AGCTGGGCCCCGGCATGTTCCAGCAGTTCCAGACGCAGGAGTGCGGCACCTGCCCCGCCA
TCAAGCTGGAGCGCGAGCAGGAGCCCATCACCGTGCACGTGGAGCCGGGCATGGTGAATG
GACACCAAATCACGTTCTTCGAGGAGGGCGAGCCGCTGGTGGACGGCGAGCCCGGCGACC
TGGTGTTCGTGGTGCGCCAGGCGCTGGACGCGCGCTTCGAGCGCCGCGGCCACGACCTCA
TGCACAACTACACCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002882A_C01 KCC002882A_c01
         (856 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK70918.1|AC087551_17 hypothetical protein [Oryza sativa]         285  5e-76
ref|NP_191819.1| expressed protein [Arabidopsis thaliana] gi|112...   271  1e-71
ref|XP_317136.1| ENSANGP00000018254 [Anopheles gambiae] gi|21300...   231  9e-60
pir||T24938 hypothetical protein T15H9.1 - Caenorhabditis elegans     231  1e-59
gb|AAL17676.1| apobec-1 binding protein 2 [Mus musculus]              230  2e-59

>gb|AAK70918.1|AC087551_17 hypothetical protein [Oryza sativa]
          Length = 347

 Score =  285 bits (730), Expect = 5e-76
 Identities = 147/266 (55%), Positives = 190/266 (71%), Gaps = 6/266 (2%)
 Frame = +3

Query: 60  APKWIALLLLGLLLLQVDRVSAKDYYELLQVPKGASEAQLKRAYRKLALQYHPDKVTGTE 239
           AP+WI  LLL LLL  V  V+ K YY++LQVPKGASE Q+KR+YRKLAL+YHPDK    E
Sbjct: 3   APRWIGPLLL-LLLHFVAAVAGKSYYDVLQVPKGASEDQIKRSYRKLALKYHPDKNPNNE 61

Query: 240 DEKKVASQRFADINHAYEVLSDPEKRKIYDQYGEDGLKQAQQQGGGHGGGN----DLFNF 407
           +    A++RFA+IN+AYE+L+D EKRKIYD+YGE+GLKQ Q QGG  GGG     D+F+ 
Sbjct: 62  E----ANKRFAEINNAYEILTDQEKRKIYDRYGEEGLKQFQAQGGRGGGGGMNIQDIFSS 117

Query: 408 FFGGFGGGQQEEE--VRKGHTIYVDLYVTLRDLYVGKELQVVRDKAVIKETSGTRKCNCK 581
           FFGG GGG +EEE  + KG  + V+L  +L DLY+G  L+V R+K VIK   G R+CNC+
Sbjct: 118 FFGGGGGGMEEEEEQIIKGDDVIVELDASLEDLYMGGSLKVWREKNVIKPAPGKRRCNCR 177

Query: 582 TKIMTRQLGPGMFQQFQTQECGTCPAIKLEREQEPITVHVEPGMVNGHQITFFEEGEPLV 761
            ++  RQ+GPGM+QQ   Q C  C  +K  RE + +TV +E GM +G +++FFEEGEP +
Sbjct: 178 NEVYHRQIGPGMYQQMTEQVCDQCANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKI 237

Query: 762 DGEPGDLVFVVRQALDARFERRGHDL 839
           DGEPGDL F +R A   RF R G+DL
Sbjct: 238 DGEPGDLKFRIRTAPHERFRREGNDL 263

>ref|NP_191819.1| expressed protein [Arabidopsis thaliana] gi|11277167|pir||T48049
           hypothetical protein F26K9.30 - Arabidopsis thaliana
           gi|7362740|emb|CAB83110.1| putative protein [Arabidopsis
           thaliana] gi|20453120|gb|AAM19802.1| AT3g62600/F26K9_30
           [Arabidopsis thaliana] gi|21593230|gb|AAM65179.1|
           unknown [Arabidopsis thaliana]
           gi|21928031|gb|AAM78044.1| At3g62600/F26K9_30
           [Arabidopsis thaliana]
          Length = 346

 Score =  271 bits (693), Expect = 1e-71
 Identities = 139/269 (51%), Positives = 189/269 (69%), Gaps = 6/269 (2%)
 Frame = +3

Query: 60  APKWIAL-LLLGLLLLQVDRVSAKDYYELLQVPKGASEAQLKRAYRKLALQYHPDKVTGT 236
           A +W  L ++L  L   +  ++ K YY++LQVPKGAS+ Q+KRAYRKLAL+YHPDK  G 
Sbjct: 2   AIRWSELCIVLFALSYAICVLAGKSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNQGN 61

Query: 237 EDEKKVASQRFADINHAYEVLSDPEKRKIYDQYGEDGLKQAQQQGGGHGGGN-----DLF 401
           E+    A+++FA+IN+AYEVLSD EKR+IY++YGE+GLKQ    GG  GGG      D+F
Sbjct: 62  EE----ATRKFAEINNAYEVLSDEEKREIYNKYGEEGLKQFSANGGRGGGGGGMNMQDIF 117

Query: 402 NFFFGGFGGGQQEEEVRKGHTIYVDLYVTLRDLYVGKELQVVRDKAVIKETSGTRKCNCK 581
           + FFGG G  ++EE+V KG  + V+L  TL DLY+G  ++V R+K VIK   G RKCNC+
Sbjct: 118 SSFFGG-GSMEEEEKVVKGDDVIVELEATLEDLYMGGSMKVWREKNVIKPAPGKRKCNCR 176

Query: 582 TKIMTRQLGPGMFQQFQTQECGTCPAIKLEREQEPITVHVEPGMVNGHQITFFEEGEPLV 761
            ++  RQ+GPGMFQQ   Q C  CP +K ERE   +TV +E GM +G +++F+E+GEP++
Sbjct: 177 NEVYHRQIGPGMFQQMTEQVCDKCPNVKYEREGYFVTVDIEKGMKDGEEVSFYEDGEPIL 236

Query: 762 DGEPGDLVFVVRQALDARFERRGHDLMHN 848
           DG+PGDL F +R A  ARF R G+DL  N
Sbjct: 237 DGDPGDLKFRIRTAPHARFRRDGNDLHMN 265

>ref|XP_317136.1| ENSANGP00000018254 [Anopheles gambiae] gi|21300281|gb|EAA12426.1|
           ENSANGP00000018254 [Anopheles gambiae str. PEST]
          Length = 398

 Score =  231 bits (590), Expect = 9e-60
 Identities = 123/264 (46%), Positives = 168/264 (63%), Gaps = 6/264 (2%)
 Frame = +3

Query: 81  LLLG---LLLLQVDRVSAKDYYELLQVPKGASEAQLKRAYRKLALQYHPDKVTGTEDEKK 251
           LL+G   LLL+  D ++ +D+Y++L + K AS+  +K+AYRKLA + HPDK     D   
Sbjct: 49  LLVGAAVLLLVADDALAGRDFYKILGLRKTASKNDVKKAYRKLAKELHPDKNKDDPD--- 105

Query: 252 VASQRFADINHAYEVLSDPEKRKIYDQYGEDGLKQAQQQGGGHGGGNDLFNFFFGGFG-- 425
            ASQ+F D+  AYEVLSD +KRK+YD+ GE+ +K+      G     D F  FFG FG  
Sbjct: 106 -ASQKFQDLGAAYEVLSDDDKRKLYDRCGEECVKKE-----GMMDNTDPFAQFFGDFGFG 159

Query: 426 -GGQQEEEVRKGHTIYVDLYVTLRDLYVGKELQVVRDKAVIKETSGTRKCNCKTKIMTRQ 602
            GGQ++ E  +G  I +DL+VTL +LY G  +++ R+K V+K  SGTRKCNC+ +++TR 
Sbjct: 160 FGGQEQRETPRGANIVMDLHVTLEELYSGNFVEITRNKPVMKPASGTRKCNCRQEMVTRN 219

Query: 603 LGPGMFQQFQTQECGTCPAIKLEREQEPITVHVEPGMVNGHQITFFEEGEPLVDGEPGDL 782
           LGPG FQ  Q   C  CP +KL  E+  I + +EPGM NG +  F  EGEP +DGEPGDL
Sbjct: 220 LGPGRFQMMQQTVCDECPNVKLVNEERTIEIEIEPGMENGQETRFSGEGEPHMDGEPGDL 279

Query: 783 VFVVRQALDARFERRGHDLMHNYT 854
           +  ++     RFERRG DL  N T
Sbjct: 280 ILKIKTVPHTRFERRGDDLYTNIT 303

>pir||T24938 hypothetical protein T15H9.1 - Caenorhabditis elegans
          Length = 355

 Score =  231 bits (588), Expect = 1e-59
 Identities = 121/267 (45%), Positives = 174/267 (64%), Gaps = 8/267 (2%)
 Frame = +3

Query: 78  LLLLGLLLLQVDRVS----AKDYYELLQVPKGASEAQLKRAYRKLALQYHPDKVTGTEDE 245
           +L + LL+L    V+     +D+Y++L V K A+  Q+K+AYRKLA + HPD+      +
Sbjct: 3   ILNVSLLVLASSLVAFVECGRDFYKILGVAKNANANQIKKAYRKLAKELHPDR----NQD 58

Query: 246 KKVASQRFADINHAYEVLSDPEKRKIYDQYGEDGLKQAQQQGGGHGGGNDLFNFFFGGF- 422
            ++A+++F D++ AYEVLSD EKR +YD++GE+G+ +    GGG GGG+D F+ FFG F 
Sbjct: 59  DEMANEKFQDLSSAYEVLSDKEKRAMYDRHGEEGVAK---MGGGGGGGHDPFSSFFGDFF 115

Query: 423 ---GGGQQEEEVRKGHTIYVDLYVTLRDLYVGKELQVVRDKAVIKETSGTRKCNCKTKIM 593
              GG   EE   KG  + +DL+VTL ++Y G  +++ R KAV K+TSGTR+CNC+ ++ 
Sbjct: 116 GGGGGHGGEEGTPKGADVTIDLFVTLEEVYNGHFVEIKRKKAVYKQTSGTRQCNCRHEMR 175

Query: 594 TRQLGPGMFQQFQTQECGTCPAIKLEREQEPITVHVEPGMVNGHQITFFEEGEPLVDGEP 773
           T Q+G G FQ FQ + C  CP +KL +E + + V VE G  NGHQ  F  EGEP ++G+P
Sbjct: 176 TEQMGQGRFQMFQVKVCDECPNVKLVQENKVLEVEVEVGADNGHQQIFHGEGEPHIEGDP 235

Query: 774 GDLVFVVRQALDARFERRGHDLMHNYT 854
           GDL F +R     RFER+G DL  N T
Sbjct: 236 GDLKFKIRIQKHPRFERKGDDLYTNVT 262

>gb|AAL17676.1| apobec-1 binding protein 2 [Mus musculus]
          Length = 358

 Score =  230 bits (587), Expect = 2e-59
 Identities = 124/271 (45%), Positives = 167/271 (60%), Gaps = 6/271 (2%)
 Frame = +3

Query: 60  APKWIALLLLGLLLLQVDRVSAKDYYELLQVPKGASEAQLKRAYRKLALQYHPDKVTGTE 239
           AP+ ++   L LL L    ++ +D+Y++L VP+ AS   +K+AYRKLALQ HPD+     
Sbjct: 2   APQNLSTFCLLLLYLIGTVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDR----N 57

Query: 240 DEKKVASQRFADINHAYEVLSDPEKRKIYDQYGEDGLKQAQQQGGGHGGGNDLFNFFFGG 419
            +   A ++F D+  AYEVLSD EKRK YD YGE+GLK   Q   G     D+F+ FFG 
Sbjct: 58  PDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHG-----DIFSHFFGD 112

Query: 420 FG---GG---QQEEEVRKGHTIYVDLYVTLRDLYVGKELQVVRDKAVIKETSGTRKCNCK 581
           FG   GG   QQ+  + +G  I VDL VTL ++Y G  ++VVR+K V ++  G RKCNC+
Sbjct: 113 FGFMFGGTPRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCR 172

Query: 582 TKIMTRQLGPGMFQQFQTQECGTCPAIKLEREQEPITVHVEPGMVNGHQITFFEEGEPLV 761
            ++ T QLGPG FQ  Q   C  CP +KL  E+  + V +EPG+++G +  F  EGEP V
Sbjct: 173 QEMRTTQLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVLDGMEYPFIGEGEPHV 232

Query: 762 DGEPGDLVFVVRQALDARFERRGHDLMHNYT 854
           DGEPGDL F ++      FERRG DL  N T
Sbjct: 233 DGEPGDLPFRIKVVKHRIFERRGDDLYTNVT 263



EST assemble image


clone accession position
1 LC035c04_r AV621381 1 534
2 LC099c10_r AV625881 431 856




Chlamydomonas reinhardtii
Kazusa DNA Research Institute