KCC002877A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002877A_C01 KCC002877A_c01
cgagcactactttgaggtgctggacgtgatcgagaagctgttcggcgccatcttcaacgg
cctggccaccacttacgccaAGGAGCTGGCGGTGATCGCGTCGCAGTACCCCTTTGAGAT
CCCCACCTTCAAGCCCCTGCGCCTCACCTTCCCCGAGGGCATTGCCATGCTCAAGGAGGG
CGGCTACCCGGACGTGGACCCCATGGGCGACCTCAACACGGAGCTGGAGCGCGCGCTGGG
CCGCATGGTCAAGGAGAAGTACGGCACCGACTTCTTCATCCTGCACCGGTACCCCTCCGC
GGTGCGCCCCTTCTACACCATGCCCTGCTCTGACGACCCCGCCTACTCCAACTCCTACGA
CGTGTTCATCCGCGGCGAGGAGATCATCTCGGGCGCGCAGCGTGTGCACGACCCCGAGCT
GCTCACCACCCGCGCCATCGAGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002877A_C01 KCC002877A_c01
         (443 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_849558.1| aspartyl-tRNA synthetase (aspartate--tRNA ligas...   186  5e-47
gb|AAL61938.1| aspartate--tRNA ligase - like protein [Arabidopsi...   186  5e-47
ref|NP_194417.2| aspartate-tRNA ligase (aspartyl-tRNA synthetase...   180  3e-45
pir||T04810 aspartate-tRNA ligase homolog F10M23.210 - Arabidops...   156  5e-38
ref|NP_588352.1| aspartyl-trna synthetase, cytoplasmic [Schizosa...   154  3e-37

>ref|NP_849558.1| aspartyl-tRNA synthetase (aspartate--tRNA ligase), putative
           [Arabidopsis thaliana] gi|30688949|ref|NP_194847.3|
           aspartyl-tRNA synthetase (aspartate--tRNA ligase),
           putative [Arabidopsis thaliana] gi|7437593|pir||T10672
           aspartate-tRNA ligase homolog F6E21.100 - Arabidopsis
           thaliana gi|7270020|emb|CAB79836.1| aspartate--tRNA
           ligase-like protein [Arabidopsis thaliana]
          Length = 558

 Score =  186 bits (473), Expect = 5e-47
 Identities = 94/149 (63%), Positives = 113/149 (75%), Gaps = 2/149 (1%)
 Frame = +2

Query: 2   EHYFEVLDVIEKLFGAIFNGLATTYAKELAVIASQYPFEIPTFKP--LRLTFPEGIAMLK 175
           +HY E++D++++LF  IF  L     KEL  +  QYPFE   F P  LRLTF EG+ MLK
Sbjct: 354 KHYSEIMDLVDELFVFIFTSLNERCKKELQAVGKQYPFEPLKFLPKTLRLTFEEGVQMLK 413

Query: 176 EGGYPDVDPMGDLNTELERALGRMVKEKYGTDFFILHRYPSAVRPFYTMPCSDDPAYSNS 355
           E G  +VDP+GDLNTE ER LG++V EKY T+F+ILHRYP AVRPFYTM C+D+P YSNS
Sbjct: 414 EAGV-EVDPLGDLNTESERKLGQLVLEKYNTEFYILHRYPKAVRPFYTMTCADNPLYSNS 472

Query: 356 YDVFIRGEEIISGAQRVHDPELLTTRAIE 442
           +DVFIRGEEIISGAQRVH PE+L  RA E
Sbjct: 473 FDVFIRGEEIISGAQRVHIPEVLEQRAGE 501

>gb|AAL61938.1| aspartate--tRNA ligase - like protein [Arabidopsis thaliana]
           gi|27311923|gb|AAO00927.1| aspartate--tRNA ligase - like
           protein [Arabidopsis thaliana]
          Length = 405

 Score =  186 bits (473), Expect = 5e-47
 Identities = 94/149 (63%), Positives = 113/149 (75%), Gaps = 2/149 (1%)
 Frame = +2

Query: 2   EHYFEVLDVIEKLFGAIFNGLATTYAKELAVIASQYPFEIPTFKP--LRLTFPEGIAMLK 175
           +HY E++D++++LF  IF  L     KEL  +  QYPFE   F P  LRLTF EG+ MLK
Sbjct: 201 KHYSEIMDLVDELFVFIFTSLNERCKKELQAVGKQYPFEPLKFLPKTLRLTFEEGVQMLK 260

Query: 176 EGGYPDVDPMGDLNTELERALGRMVKEKYGTDFFILHRYPSAVRPFYTMPCSDDPAYSNS 355
           E G  +VDP+GDLNTE ER LG++V EKY T+F+ILHRYP AVRPFYTM C+D+P YSNS
Sbjct: 261 EAGV-EVDPLGDLNTESERKLGQLVLEKYNTEFYILHRYPKAVRPFYTMTCADNPLYSNS 319

Query: 356 YDVFIRGEEIISGAQRVHDPELLTTRAIE 442
           +DVFIRGEEIISGAQRVH PE+L  RA E
Sbjct: 320 FDVFIRGEEIISGAQRVHIPEVLEQRAGE 348

>ref|NP_194417.2| aspartate-tRNA ligase (aspartyl-tRNA synthetase), putative
           [Arabidopsis thaliana] gi|24030349|gb|AAN41339.1|
           putative aspartate-tRNA ligase [Arabidopsis thaliana]
          Length = 532

 Score =  180 bits (457), Expect = 3e-45
 Identities = 92/148 (62%), Positives = 111/148 (74%), Gaps = 2/148 (1%)
 Frame = +2

Query: 5   HYFEVLDVIEKLFGAIFNGLATTYAKELAVIASQYPFEIPTFKP--LRLTFPEGIAMLKE 178
           HY E++D++ +LF  IF  +     KEL  +  QYPF+   F P  LRLTF EGI MLKE
Sbjct: 329 HYSEIMDLVGELFPFIFTKIEERCPKELESVRKQYPFQSLKFLPQTLRLTFAEGIQMLKE 388

Query: 179 GGYPDVDPMGDLNTELERALGRMVKEKYGTDFFILHRYPSAVRPFYTMPCSDDPAYSNSY 358
            G  +VDP+GDLNTE ER LG++V EKY T+F++LHRYPSAVRPFYTMP  +D  YSNS+
Sbjct: 389 AG-EEVDPLGDLNTESERKLGQLVLEKYKTEFYMLHRYPSAVRPFYTMPYENDSNYSNSF 447

Query: 359 DVFIRGEEIISGAQRVHDPELLTTRAIE 442
           DVFIRGEEI+SGAQR+HDPELL  RA E
Sbjct: 448 DVFIRGEEIMSGAQRIHDPELLEKRARE 475

>pir||T04810 aspartate-tRNA ligase homolog F10M23.210 - Arabidopsis thaliana
           gi|4455210|emb|CAB36533.1| putative aspartate-tRNA
           ligase [Arabidopsis thaliana] gi|7269540|emb|CAB79542.1|
           putative aspartate-tRNA ligase [Arabidopsis thaliana]
          Length = 504

 Score =  156 bits (395), Expect = 5e-38
 Identities = 81/146 (55%), Positives = 100/146 (68%)
 Frame = +2

Query: 5   HYFEVLDVIEKLFGAIFNGLATTYAKELAVIASQYPFEIPTFKPLRLTFPEGIAMLKEGG 184
           HY E++D++ +LF  IF  +     KEL  +  QYPF+                 LKE G
Sbjct: 319 HYSEIMDLVGELFPFIFTKIEERCPKELESVRKQYPFQ----------------SLKEAG 362

Query: 185 YPDVDPMGDLNTELERALGRMVKEKYGTDFFILHRYPSAVRPFYTMPCSDDPAYSNSYDV 364
             +VDP+GDLNTE ER LG++V EKY T+F++LHRYPSAVRPFYTMP  +D  YSNS+DV
Sbjct: 363 -EEVDPLGDLNTESERKLGQLVLEKYKTEFYMLHRYPSAVRPFYTMPYENDSNYSNSFDV 421

Query: 365 FIRGEEIISGAQRVHDPELLTTRAIE 442
           FIRGEEI+SGAQR+HDPELL  RA E
Sbjct: 422 FIRGEEIMSGAQRIHDPELLEKRARE 447

>ref|NP_588352.1| aspartyl-trna synthetase, cytoplasmic [Schizosaccharomyces pombe]
           gi|7490128|pir||T40867 aspartate-tRNA ligase (EC
           6.1.1.12) [similarity] - fission yeast
           (Schizosaccharomyces pombe) gi|3618213|emb|CAA20876.1|
           SPCC1223.07c [Schizosaccharomyces pombe]
          Length = 580

 Score =  154 bits (388), Expect = 3e-37
 Identities = 80/168 (47%), Positives = 107/168 (63%), Gaps = 24/168 (14%)
 Frame = +2

Query: 2   EHYFEVLDVIEKLFGAIFNGLATTYAKELAVIASQYPFE---IPTFKPLRLTFPEGIAML 172
           EHY EV++ IEKLF  IF  +   YAK++AV+  QYP E   +P    +R  F + + +L
Sbjct: 355 EHYHEVMEFIEKLFLYIFKTIREKYAKQVAVVRQQYPSEDFILPDADRIRFHFKDAVKLL 414

Query: 173 KEGGY---------------------PDVDPMGDLNTELERALGRMVKEKYGTDFFILHR 289
           KE GY                     P+ D   D +T  ERALG++V+EKY TDF+++ +
Sbjct: 415 KEAGYRKQLVPGQKVPEDEEFHYCEDPEFD---DFSTPEERALGQIVREKYHTDFYVIDK 471

Query: 290 YPSAVRPFYTMPCSDDPAYSNSYDVFIRGEEIISGAQRVHDPELLTTR 433
           YPS+VRPFYTMP  +DP YSNSYD F++G+EI+SGAQR+HDPELL  R
Sbjct: 472 YPSSVRPFYTMPDPEDPRYSNSYDFFMKGQEIMSGAQRIHDPELLVER 519



EST assemble image


clone accession position
1 LC032d04_r AV621183 1 417
2 LCL082a01_r AV630642 93 443




Chlamydomonas reinhardtii
Kazusa DNA Research Institute