Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002876A_C01 KCC002876A_c01
(481 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH42354.1| Similar to splicing factor, arginine/serine-rich ... 62 6e-25
ref|NP_190512.2| arginine/serine-rich splicing factor (atSRp34),... 60 2e-24
gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 ... 60 2e-24
pir||T46221 PRE-MRNA SPLICING FACTOR SF2-like protein - Arabidop... 60 2e-24
gb|AAH55511.1| Unknown (protein for MGC:66146) [Danio rerio] 56 2e-22
>gb|AAH42354.1| Similar to splicing factor, arginine/serine-rich 1 (splicing factor
2, alternate splicing factor) [Xenopus laevis]
Length = 283
Score = 62.4 bits (150), Expect(3) = 6e-25
Identities = 29/42 (69%), Positives = 29/42 (69%)
Frame = +2
Query: 341 GQRLRVEVSHGRRGGAGGGGGGFGGGGGGFGGGGGGYGGGGG 466
G RLRVE RG G GGGG GGG GG GGGGGG GGGGG
Sbjct: 100 GYRLRVEFPRSGRGAGGRGGGGGGGGSGGGGGGGGGGGGGGG 141
Score = 51.2 bits (121), Expect(3) = 6e-25
Identities = 19/32 (59%), Positives = 28/32 (87%)
Frame = +3
Query: 147 RVFVGNLPMDVREREVEDLFFKYGRIRSVDLK 242
R++VGNLP D+R +++ED+F+KYG IR +DLK
Sbjct: 36 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK 67
Score = 41.6 bits (96), Expect(3) = 6e-25
Identities = 19/28 (67%), Positives = 21/28 (74%)
Frame = +1
Query: 259 PLCAFVEFEDERDAADAVRGRDGIEFQG 342
P AFVEFED RDA DAV GRDG ++ G
Sbjct: 73 PPFAFVEFEDPRDAEDAVYGRDGYDYDG 100
>ref|NP_190512.2| arginine/serine-rich splicing factor (atSRp34), putative
[Arabidopsis thaliana]
Length = 341
Score = 60.1 bits (144), Expect(3) = 2e-24
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = +3
Query: 150 VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPP 260
++VGNLP D+RE E+ED+F+KYGRI ++LK+ PRPP
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPP 45
Score = 53.1 bits (126), Expect(3) = 2e-24
Identities = 26/45 (57%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 GQRLRVEVSHGRRG-GAGGGGGGFGGGGGGFGGGGGGYGGGGGYG 472
G RLRVE++HG RG + GG+GGGG G+GGGGGG GG +G
Sbjct: 72 GCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGG-GGSARFG 115
Score = 40.4 bits (93), Expect(3) = 2e-24
Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 250 PVRPLC-AFVEFEDERDAADAVRGRDGIEFQG 342
P RP C FVEFE RDA DA++GRDG G
Sbjct: 41 PPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDG 72
>gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 [Arabidopsis thaliana]
Length = 295
Score = 60.1 bits (144), Expect(3) = 2e-24
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = +3
Query: 150 VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPP 260
++VGNLP D+RE E+ED+F+KYGRI ++LK+ PRPP
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPP 45
Score = 53.1 bits (126), Expect(3) = 2e-24
Identities = 26/45 (57%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 GQRLRVEVSHGRRG-GAGGGGGGFGGGGGGFGGGGGGYGGGGGYG 472
G RLRVE++HG RG + GG+GGGG G+GGGGGG GG +G
Sbjct: 72 GCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGG-GGSARFG 115
Score = 40.4 bits (93), Expect(3) = 2e-24
Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 250 PVRPLC-AFVEFEDERDAADAVRGRDGIEFQG 342
P RP C FVEFE RDA DA++GRDG G
Sbjct: 41 PPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDG 72
>pir||T46221 PRE-MRNA SPLICING FACTOR SF2-like protein - Arabidopsis thaliana
gi|6561944|emb|CAB62448.1| PRE-MRNA SPLICING FACTOR
SF2-like protein [Arabidopsis thaliana]
Length = 243
Score = 60.1 bits (144), Expect(3) = 2e-24
Identities = 23/37 (62%), Positives = 32/37 (86%)
Frame = +3
Query: 150 VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPP 260
++VGNLP D+RE E+ED+F+KYGRI ++LK+ PRPP
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPP 45
Score = 53.1 bits (126), Expect(3) = 2e-24
Identities = 26/45 (57%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 GQRLRVEVSHGRRG-GAGGGGGGFGGGGGGFGGGGGGYGGGGGYG 472
G RLRVE++HG RG + GG+GGGG G+GGGGGG GG +G
Sbjct: 72 GCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGG-GGSARFG 115
Score = 40.4 bits (93), Expect(3) = 2e-24
Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 250 PVRPLC-AFVEFEDERDAADAVRGRDGIEFQG 342
P RP C FVEFE RDA DA++GRDG G
Sbjct: 41 PPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDG 72
>gb|AAH55511.1| Unknown (protein for MGC:66146) [Danio rerio]
Length = 245
Score = 56.2 bits (134), Expect(3) = 2e-22
Identities = 31/47 (65%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 341 GQRLRVEVSHGRRGGAGGGGGGFGGGGGGFGGGGGGYGGG---GGYG 472
G RLRVE R G G G GGFGGGGGG GGGGGG GGG G YG
Sbjct: 80 GYRLRVEFP---RSGRGMGRGGFGGGGGGGGGGGGGGGGGAPRGRYG 123
Score = 51.6 bits (122), Expect(3) = 2e-22
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +3
Query: 147 RVFVGNLPMDVREREVEDLFFKYGRIRSVDLK 242
R++VGNLP D+R ++VED+F+KYG IR +DLK
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLK 47
Score = 39.3 bits (90), Expect(3) = 2e-22
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 259 PLCAFVEFEDERDAADAVRGRDGIEFQG 342
P AFVEFED RDA DAV RDG ++ G
Sbjct: 53 PPFAFVEFEDPRDAEDAVYARDGYDYDG 80
