KCC002875A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002875A_C01 KCC002875A_c01
cacactcaaactgctttggtcagcagtgtcatcgcaactgttcaatcctccaccagGGGC
CTGCACCGCGTCTAAACGTTTTCGAGACGGATACAGAGACGGATACAGCTTTCAGAATGC
GTATTTCCTCGCGTACCGTGGCCTTGCTATAGCTTCACGAGCTGCATATAGCGCACAAGC
CTGCAGATTAGAAGGGAACCTCGCGGAAGCCGATCCGCAGGATGTTGCCCCAGGCGACCA
CGGCGGGGAAGCGGGGCAACAAAGGATACCTGGGGACGTATCTGCGCCGCTTCCTCAAGC
CAAAACAATGGGACCTGGAGTACACGTTTTGGATGATGCTGCAGCTGGTCATATCGCCGA
AGACAGCGTACCGGCACACAGCTTACCACAAGCAGACCAAAAACCAGTGGGCGCGGGATG
ACCCGGCCTTCATCGTCGTGTGCTGTGCGCTGGTAACGGTTGCCAGCCTCGCATACTGTG
TCACGTTCGGCGACACGCTGTGGCACACGTTACTCACCGTGTTGTCGGCGGTGCTGGTTG
ACTTCCTGCTGATCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002875A_C01 KCC002875A_c01
         (556 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM61449.1| unknown [Arabidopsis thaliana]                         122  2e-27
ref|NP_565370.1| expressed protein [Arabidopsis thaliana] gi|141...   121  7e-27
pir||F84526 hypothetical protein At2g15240 [imported] - Arabidop...   121  7e-27
ref|NP_649813.1| CG9773-PA [Drosophila melanogaster] gi|7299067|...    84  1e-15
ref|XP_312002.1| ENSANGP00000018672 [Anopheles gambiae] gi|30177...    81  1e-14

>gb|AAM61449.1| unknown [Arabidopsis thaliana]
          Length = 252

 Score =  122 bits (307), Expect = 2e-27
 Identities = 56/107 (52%), Positives = 77/107 (71%)
 Frame = +3

Query: 231 QATTAGKRGNKGYLGTYLRRFLKPKQWDLEYTFWMMLQLVISPKTAYRHTAYHKQTKNQW 410
           +++++  R N  +L  Y RR +K +Q D+EYTFW ML L  SPK  Y+HT YHKQTKNQW
Sbjct: 9   RSSSSSSRANPMFL-QYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKYHKQTKNQW 67

Query: 411 ARDDPAFIVVCCALVTVASLAYCVTFGDTLWHTLLTVLSAVLVDFLL 551
           ARDDPAFIV+C  L+ VA++AYCVT+  +  H ++ V+S +L  FL+
Sbjct: 68  ARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLLTHFLI 114

>ref|NP_565370.1| expressed protein [Arabidopsis thaliana]
           gi|14190389|gb|AAK55675.1|AF378872_1 At2g15240/F15A23.2
           [Arabidopsis thaliana] gi|15450545|gb|AAK96450.1|
           At2g15240/F15A23.2 [Arabidopsis thaliana]
           gi|20197743|gb|AAD25568.2| expressed protein
           [Arabidopsis thaliana]
          Length = 252

 Score =  121 bits (303), Expect = 7e-27
 Identities = 55/107 (51%), Positives = 76/107 (70%)
 Frame = +3

Query: 231 QATTAGKRGNKGYLGTYLRRFLKPKQWDLEYTFWMMLQLVISPKTAYRHTAYHKQTKNQW 410
           +++++  R N  +L  Y RR +K +Q D+EYTFW ML L  SPK  Y+HT YHKQTKNQW
Sbjct: 9   RSSSSSSRANPMFL-QYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKYHKQTKNQW 67

Query: 411 ARDDPAFIVVCCALVTVASLAYCVTFGDTLWHTLLTVLSAVLVDFLL 551
           ARDDPAFIV+C  L+ VA++AYCVT+  +  H ++ V+S +   FL+
Sbjct: 68  ARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLFTHFLI 114

>pir||F84526 hypothetical protein At2g15240 [imported] - Arabidopsis thaliana
          Length = 323

 Score =  121 bits (303), Expect = 7e-27
 Identities = 55/107 (51%), Positives = 76/107 (70%)
 Frame = +3

Query: 231 QATTAGKRGNKGYLGTYLRRFLKPKQWDLEYTFWMMLQLVISPKTAYRHTAYHKQTKNQW 410
           +++++  R N  +L  Y RR +K +Q D+EYTFW ML L  SPK  Y+HT YHKQTKNQW
Sbjct: 9   RSSSSSSRANPMFL-QYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKYHKQTKNQW 67

Query: 411 ARDDPAFIVVCCALVTVASLAYCVTFGDTLWHTLLTVLSAVLVDFLL 551
           ARDDPAFIV+C  L+ VA++AYCVT+  +  H ++ V+S +   FL+
Sbjct: 68  ARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLFTHFLI 114

>ref|NP_649813.1| CG9773-PA [Drosophila melanogaster] gi|7299067|gb|AAF54267.1|
           CG9773-PA [Drosophila melanogaster]
           gi|21064395|gb|AAM29427.1| RE19904p [Drosophila
           melanogaster]
          Length = 275

 Score = 84.3 bits (207), Expect = 1e-15
 Identities = 38/92 (41%), Positives = 55/92 (59%)
 Frame = +3

Query: 279 YLRRFLKPKQWDLEYTFWMMLQLVISPKTAYRHTAYHKQTKNQWARDDPAFIVVCCALVT 458
           YLRR LK  Q D E+  W ML L ++P+  YR+  Y KQTK+Q+ARDDPAF+V+    + 
Sbjct: 51  YLRRLLKFNQMDFEFALWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPAFLVLLVVCLC 110

Query: 459 VASLAYCVTFGDTLWHTLLTVLSAVLVDFLLI 554
           V SL +    G + W ++  +   V VD + +
Sbjct: 111 VTSLGFAYVLGLSFWQSISFIFYVVFVDCIFV 142

>ref|XP_312002.1| ENSANGP00000018672 [Anopheles gambiae] gi|30177346|gb|EAA08030.2|
           ENSANGP00000018672 [Anopheles gambiae str. PEST]
          Length = 263

 Score = 80.9 bits (198), Expect = 1e-14
 Identities = 40/88 (45%), Positives = 52/88 (58%)
 Frame = +3

Query: 279 YLRRFLKPKQWDLEYTFWMMLQLVISPKTAYRHTAYHKQTKNQWARDDPAFIVVCCALVT 458
           YLRRF+K  Q D EY  W M+ L I+PK  YR+  Y KQTK+Q+ARDDPAF+V+    + 
Sbjct: 77  YLRRFIKFDQMDFEYAMWQMVYLFIAPKKVYRNFNYRKQTKSQFARDDPAFLVLLVGCLC 136

Query: 459 VASLAYCVTFGDTLWHTLLTVLSAVLVD 542
           V S+ +          T+L  L  V VD
Sbjct: 137 VTSIGFAWVLSLGFLQTILFTLYVVFVD 164



EST assemble image


clone accession position
1 LC057h10_r AV623025 1 516
2 LC031d10_r AV621114 57 556
3 MX225d08_r BP090541 57 351




Chlamydomonas reinhardtii
Kazusa DNA Research Institute