Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002874A_C01 KCC002874A_c01
(531 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B40505 hypothetical protein - suid herpesvirus 1 (strain In... 42 3e-04
ref|NP_880016.1| conserved hypothetical protein [Bordetella pert... 46 3e-04
emb|CAE05986.1| OSJNBa0004L19.11 [Oryza sativa (japonica cultiva... 44 0.002
ref|NP_601191.1| translation initiation factor 2 [Corynebacteriu... 32 0.003
gb|AAC96325.1| ZIC2 protein [Homo sapiens] 34 0.003
>pir||B40505 hypothetical protein - suid herpesvirus 1 (strain Indiana-Funkhuser
or Becker) gi|334068|gb|AAA47468.1| ORF2
Length = 1958
Score = 42.4 bits (98), Expect(2) = 3e-04
Identities = 26/78 (33%), Positives = 33/78 (41%), Gaps = 11/78 (14%)
Frame = +1
Query: 328 PEPAGRPSAPASRRVHAGGGGRSGGRGGGRGGADRQ-----------ANERQQGHYQVDE 474
P P P+ ++RR GGGG GRGG R G R+ A E + G DE
Sbjct: 501 PPPQPPPAGGSARRRRRGGGGGPPGRGGRRRGGKRRRAEGTEAAAADAEEEEDGDEDEDE 560
Query: 475 GHVQEAGLAGGPAGQTGA 528
++ G G G GA
Sbjct: 561 DRAEDEGREDGGEGPRGA 578
Score = 38.5 bits (88), Expect = 0.055
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -2
Query: 431 RSAPPLPPPLPPLLPPPP-----A*TRRLAGADGRPAGSGCQEQQQLRRR 297
R PPLPPP PP PP P + RR G G P G G + + RRR
Sbjct: 488 RPPPPLPPPPPPPPPPQPPPAGGSARRRRRGGGGGPPGRGGRRRGGKRRR 537
Score = 35.0 bits (79), Expect = 0.60
Identities = 42/125 (33%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Frame = +1
Query: 139 ASKAATSAQQRDPPAGPRGGAFGLDSEREGGRSARQGHDSQRWTKLHKSLTRLRRLSCCC 318
A A +A +RD P G G G R R GH + W + R RR
Sbjct: 1804 AGGGAAAAGRRDRPGGGGGWGSGPPPCR------RCGH--RCWLCWWRRGPRPRRRPGLT 1855
Query: 319 S*QPEPAGRPSAPASRRVHAGGGGRSG-GRGGGRGGADRQANERQQGHYQVDEGHVQEAG 495
P P G PS P RR G GG G G GGGRGG G + G
Sbjct: 1856 DRVP-PRGGPS-PRGRRGAGGAGGAGGAGGGGGRGGC----------------GGGRAPG 1897
Query: 496 LAGGP 510
AGGP
Sbjct: 1898 AAGGP 1902
Score = 23.1 bits (48), Expect(2) = 3e-04
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 276 PQIPHPPPPP 305
P +P PPPPP
Sbjct: 491 PPLPPPPPPP 500
>ref|NP_880016.1| conserved hypothetical protein [Bordetella pertussis]
gi|33572017|emb|CAE41540.1| conserved hypothetical
protein [Bordetella pertussis]
Length = 588
Score = 45.8 bits (107), Expect = 3e-04
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Frame = +1
Query: 178 PAGPRGGAFGLDSEREGGRSARQGHDSQRWTKLHKSLTRLRRLSCCCS*QPEPAGR--PS 351
PAG RGG ++ GGR+A G + + P G P+
Sbjct: 481 PAGARGG------KKAGGRAAAPGAKGAGGRAGGNKAASAGGKAAGVAKPASPTGNRGPA 534
Query: 352 APASRRVHAGGGGRSGGRGGGRGGADRQANERQQGHYQVDEGHVQEAGLAGGPAGQ 519
AP +R GGGG GG GGG GG R + + +G H G GG G+
Sbjct: 535 APKPQRARRGGGGAGGGGGGGGGGGGRGDDWQPKG----AGAHESRLGFMGGRGGR 586
>emb|CAE05986.1| OSJNBa0004L19.11 [Oryza sativa (japonica cultivar-group)]
Length = 390
Score = 43.5 bits (101), Expect = 0.002
Identities = 39/137 (28%), Positives = 55/137 (39%), Gaps = 6/137 (4%)
Frame = +1
Query: 124 ITSNQASKAATSAQQRDPPAGPRGGAFGLDSEREGGRSARQGHDSQRWTKLHKSLTRLRR 303
+ A +AA +A++ G R GA GR +R+ D + W + +
Sbjct: 185 VADEAADEAADAAERTG--GGGRSGA---------GRGSRRRRDGRPWRRRGGA------ 227
Query: 304 LSCCCS*QPEPAG------RPSAPASRRVHAGGGGRSGGRGGGRGGADRQANERQQGHYQ 465
+ E AG RP A A G GR GGR G GG+ R+ ER++G Q
Sbjct: 228 -------EREAAGADDERRRPVAETVADEAAAGRGRRGGRSGAGGGSRRRRMERRRGREQ 280
Query: 466 VDEGHVQEAGLAGGPAG 516
+EG A AG
Sbjct: 281 AEEGRAAVAAPRRSRAG 297
>ref|NP_601191.1| translation initiation factor 2 [Corynebacterium glutamicum ATCC
13032] gi|21324755|dbj|BAB99378.1| Translation
initiation factor 2 (GTPase) [Corynebacterium glutamicum
ATCC 13032]
Length = 1004
Score = 32.0 bits (71), Expect(2) = 0.003
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 224 REGAQRGRGMTPSGGP---SSTNPSPASAASAAAAPDSQNQQGARR 352
R+GA G G P GGP + P SA A AP + Q G RR
Sbjct: 267 RQGAGAG-GPRPQGGPRPQGGSRPQGGSAQGAQGAPSQERQGGGRR 311
Score = 30.0 bits (66), Expect(2) = 0.003
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 325 QPEPAGRPSAPASRRVHAGGGGRSGGR-GGGRGGADRQANERQQGHYQVDEGHVQEAGLA 501
+P PA P P A G G GG+ GGG GG + G G
Sbjct: 311 RPSPAMMPPTPGQMPAKAPGKGGRGGQAGGGAGGGFNRGGG--------TGGGAGRGGRR 362
Query: 502 GGPAGQTG 525
GG AG G
Sbjct: 363 GGTAGAFG 370
>gb|AAC96325.1| ZIC2 protein [Homo sapiens]
Length = 533
Score = 34.3 bits (77), Expect(2) = 0.003
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +1
Query: 337 AGRPSAPASRRVHAGGGGRSGGRGGGRGG 423
A +A A VH GGG SGG GGG GG
Sbjct: 464 AAAAAAAAVSAVHRGGGSGSGGAGGGSGG 492
Score = 27.7 bits (60), Expect(2) = 0.003
Identities = 20/48 (41%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
Frame = +2
Query: 179 PRVPEEAPLDLIQKGREGAQRGRGMTPSGGP-SSTNPSPASAASAAAA 319
P+ E +P G E + ++PS P SS+N SPA+AA+AAAA
Sbjct: 420 PQGSESSPA--ASSGYESSTPPGLVSPSAEPQSSSNLSPAAAAAAAAA 465
